Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018564A_C01 KMC018564A_c01
(567 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM66002.1| unknown [Arabidopsis thaliana] 211 7e-54
ref|NP_564847.1| expressed protein; protein id: At1g65270.1, sup... 211 7e-54
ref|NP_054121.1| AcOrf-91 peptide [Autographa californica nucleo... 47 2e-04
pir||S22697 extensin - Volvox carteri (fragment) gi|21992|emb|CA... 44 0.001
pir||S50755 hypothetical protein VSP-3 - Chlamydomonas reinhardt... 44 0.001
>gb|AAM66002.1| unknown [Arabidopsis thaliana]
Length = 292
Score = 211 bits (536), Expect = 7e-54
Identities = 108/178 (60%), Positives = 137/178 (76%), Gaps = 10/178 (5%)
Frame = +1
Query: 64 LAVAVFLACLI-SVSLSFQSDELL-DDEEFGLEGGRP-------SQSESRPPPSTTTTNR 216
L + FL+ LI S S++FQSDELL DD+EFGLEG +P S S S T T R
Sbjct: 4 LTLLFFLSFLIFSSSIAFQSDELLVDDDEFGLEGAKPRSTDLYTSSSSSPQQQQQTPTIR 63
Query: 217 KRFSDSSS-DSKIQFILQHAFGDSDFTDAGNFSARLKTWSHGAQTLTKLRFTRDTFTDVE 393
+R+SD + DSK+QF L+HAFGDSDF+ AG FSARLKTWSHG +TLTKLRF+R+ F+ E
Sbjct: 64 RRYSDPTDLDSKVQFTLEHAFGDSDFSPAGTFSARLKTWSHGGKTLTKLRFSRNDFSAKE 123
Query: 394 KNKFQELLQGDDFYKIRLPSNVLSPPGRDYIVSSVKARCLPGDGXEEHFVIHTEGVNI 567
K+ F+ LL+GDDFY+IRLPSNV+SPPGR+++++SV+ARCLP DG +EHF+IH EG NI
Sbjct: 124 KDAFKNLLKGDDFYRIRLPSNVVSPPGREFVIASVRARCLPRDGLDEHFIIHMEGANI 181
>ref|NP_564847.1| expressed protein; protein id: At1g65270.1, supported by cDNA:
6906. [Arabidopsis thaliana] gi|7459138|pir||T02349
hypothetical protein T8F5.4 - Arabidopsis thaliana
gi|3335335|gb|AAC27137.1|AAC27137 ESTs gb|F14113 and
gb|T42122 come from this region. [Arabidopsis thaliana]
gi|27311649|gb|AAO00790.1| expressed protein
[Arabidopsis thaliana]
Length = 292
Score = 211 bits (536), Expect = 7e-54
Identities = 108/178 (60%), Positives = 137/178 (76%), Gaps = 10/178 (5%)
Frame = +1
Query: 64 LAVAVFLACLI-SVSLSFQSDELL-DDEEFGLEGGRP-------SQSESRPPPSTTTTNR 216
L + FL+ LI S S++FQSDELL DD+EFGLEG +P S S S T T R
Sbjct: 4 LTLLFFLSFLIFSSSIAFQSDELLVDDDEFGLEGAKPRSTDLYTSSSSSPQQQQQTPTIR 63
Query: 217 KRFSDSSS-DSKIQFILQHAFGDSDFTDAGNFSARLKTWSHGAQTLTKLRFTRDTFTDVE 393
+R+SD + DSK+QF L+HAFGDSDF+ AG FSARLKTWSHG +TLTKLRF+R+ F+ E
Sbjct: 64 RRYSDPTDLDSKVQFTLEHAFGDSDFSPAGTFSARLKTWSHGGKTLTKLRFSRNDFSAEE 123
Query: 394 KNKFQELLQGDDFYKIRLPSNVLSPPGRDYIVSSVKARCLPGDGXEEHFVIHTEGVNI 567
K+ F+ LL+GDDFY+IRLPSNV+SPPGR+++++SV+ARCLP DG +EHF+IH EG NI
Sbjct: 124 KDAFKNLLKGDDFYRIRLPSNVVSPPGREFVIASVRARCLPRDGLDEHFIIHMEGANI 181
>ref|NP_054121.1| AcOrf-91 peptide [Autographa californica nucleopolyhedrovirus]
gi|1175115|sp|P41479|Y091_NPVAC HYPOTHETICAL 24.1 KD
PROTEIN IN LEF4-P33 INTERGENIC REGION
gi|7460452|pir||D72861 AcOrf-91 protein - Autographa
californica nuclear polyhedrosis virus
gi|559160|gb|AAA66721.1| AcOrf-91 peptide [Autographa
californica nucleopolyhedrovirus]
Length = 224
Score = 47.0 bits (110), Expect = 2e-04
Identities = 25/57 (43%), Positives = 31/57 (53%), Gaps = 1/57 (1%)
Frame = +2
Query: 170 PSPNPVLHLPPPPPIG-RDFPTPPPIPRSSSFSNTPLETPISPTPATSPLASKLGAT 337
P+P+P PPP PI PTPPP P + + TP +PI PTP SP S + T
Sbjct: 58 PTPSPPSPTPPPTPIPPTPTPTPPPTPIPPTPTPTPPPSPIPPTPTPSPPPSPIPPT 114
Score = 46.6 bits (109), Expect = 2e-04
Identities = 23/46 (50%), Positives = 25/46 (54%)
Frame = +2
Query: 176 PNPVLHLPPPPPIGRDFPTPPPIPRSSSFSNTPLETPISPTPATSP 313
PNP + PP P PTPPP P S S TP TPI PTP +P
Sbjct: 35 PNPPIVPPPTSPPIVPLPTPPPTPTPSPPSPTPPPTPIPPTPTPTP 80
Score = 45.8 bits (107), Expect = 4e-04
Identities = 24/59 (40%), Positives = 31/59 (51%), Gaps = 3/59 (5%)
Frame = +2
Query: 170 PSPNPVLHLPPPPPI---GRDFPTPPPIPRSSSFSNTPLETPISPTPATSPLASKLGAT 337
P+ P++ LP PPP PTPPP P + + TP TPI PTP +P S + T
Sbjct: 43 PTSPPIVPLPTPPPTPTPSPPSPTPPPTPIPPTPTPTPPPTPIPPTPTPTPPPSPIPPT 101
Score = 42.0 bits (97), Expect = 0.005
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 170 PSPNPVLHLPPPPPIG-RDFPTPPPIPRSSSFSNTPLETPISPTPATSPLASKLGAT 337
P+P P PPP PI PTPPP P + + +P +PI PTP SP S + T
Sbjct: 74 PTPTPT---PPPTPIPPTPTPTPPPSPIPPTPTPSPPPSPIPPTPTPSPPPSPIPPT 127
Score = 40.4 bits (93), Expect = 0.015
Identities = 21/54 (38%), Positives = 26/54 (47%)
Frame = +2
Query: 170 PSPNPVLHLPPPPPIGRDFPTPPPIPRSSSFSNTPLETPISPTPATSPLASKLG 331
P+P P P PP P P PIP + + S P P +PTP+ P S LG
Sbjct: 87 PTPTPTPPPSPIPPTPTPSPPPSPIPPTPTPSPPPSPIPPTPTPSPPPSPSPLG 140
Score = 36.2 bits (82), Expect = 0.29
Identities = 24/53 (45%), Positives = 26/53 (48%)
Frame = +2
Query: 170 PSPNPVLHLPPPPPIGRDFPTPPPIPRSSSFSNTPLETPISPTPATSPLASKL 328
PSP P P PPP PTP P P S TP TP SP P+ SPL +
Sbjct: 95 PSPIPPTPTPSPPPSPIP-PTPTPSPPPSPIPPTP--TP-SPPPSPSPLGEPM 143
>pir||S22697 extensin - Volvox carteri (fragment) gi|21992|emb|CAA46283.1|
extensin [Volvox carteri]
Length = 464
Score = 44.3 bits (103), Expect = 0.001
Identities = 30/79 (37%), Positives = 38/79 (47%), Gaps = 2/79 (2%)
Frame = +2
Query: 83 SPA*SPSLCLSNPMNFSTTKNSASKVDAHPSPNPVLHLPPPP--PIGRDFPTPPPIPRSS 256
SP+ P +S+P + S S SP+P PPPP P R P+PPP PRSS
Sbjct: 298 SPSPPPPQPVSSPPPPPPPRPSPSPPPPRSSPSPPPPSPPPPSPPPPRPSPSPPP-PRSS 356
Query: 257 SFSNTPLETPISPTPATSP 313
P+ +P P P SP
Sbjct: 357 PSPPPPVVSPPPPPPRASP 375
Score = 41.6 bits (96), Expect = 0.007
Identities = 22/49 (44%), Positives = 25/49 (50%)
Frame = +2
Query: 155 KVDAHPSPNPVLHLPPPPPIGRDFPTPPPIPRSSSFSNTPLETPISPTP 301
+V P P + PPPPP R P+PPP PRSS P P SP P
Sbjct: 296 RVSPSPPPPQPVSSPPPPPPPRPSPSPPP-PRSSPSPPPPSPPPPSPPP 343
Score = 39.3 bits (90), Expect = 0.034
Identities = 19/48 (39%), Positives = 22/48 (45%)
Frame = +2
Query: 170 PSPNPVLHLPPPPPIGRDFPTPPPIPRSSSFSNTPLETPISPTPATSP 313
P P P + PPPP P PPP PR S P +P P P+ P
Sbjct: 291 PPPPPRVSPSPPPPQPVSSPPPPPPPRPSPSPPPPRSSPSPPPPSPPP 338
Score = 37.7 bits (86), Expect = 0.10
Identities = 21/58 (36%), Positives = 25/58 (42%)
Frame = +2
Query: 170 PSPNPVLHLPPPPPIGRDFPTPPPIPRSSSFSNTPLETPISPTPATSPLASKLGATAL 343
P P P PPPPP P P P P S S P T + P+ +P S+ G L
Sbjct: 366 PPPPPPRASPPPPPASSPPPPPRPPPPSPPPSPPPPATAAANPPSPAPSRSRAGGPPL 423
Score = 37.4 bits (85), Expect = 0.13
Identities = 23/51 (45%), Positives = 27/51 (52%)
Frame = +2
Query: 170 PSPNPVLHLPPPPPIGRDFPTPPPIPRSSSFSNTPLETPISPTPATSPLAS 322
PSP P + PPPPP R P PPP +SS P P SP P+ P A+
Sbjct: 357 PSPPPPVVSPPPPP-PRASPPPPP---ASSPPPPPRPPPPSPPPSPPPPAT 403
Score = 33.9 bits (76), Expect = 1.4
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +2
Query: 173 SPNPVLHLPPPPPIGRDFPTPPPIPRSSSFSNTPLETPISPTPATSP 313
SP P +PP PP P PPP PR S + P P+S P P
Sbjct: 271 SPPPPPRVPPSPPPPVASPPPPPPPRVS--PSPPPPQPVSSPPPPPP 315
Score = 33.5 bits (75), Expect = 1.9
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +2
Query: 164 AHPSPNPVLHLPPPPPIGRDFPTPPPIPRSSSFSNTPLETPISPTPATSPLASK 325
A P P P PPPP P P P P +++ +N P P PL ++
Sbjct: 373 ASPPPPPASSPPPPPRPPPPSPPPSPPPPATAAANPPSPAPSRSRAGGPPLGTR 426
Score = 33.1 bits (74), Expect = 2.5
Identities = 28/83 (33%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Frame = +2
Query: 83 SPA*SPSLCLSNPMNFSTTKNSASKVDAHPSPNPVLHLP-PPPPIGRDFPTPPPIPRSS- 256
SP+ P +P S S PSP P P PPPP+ PPP PR+S
Sbjct: 319 SPSPPPPRSSPSPPPPSPPPPSPPPPRPSPSPPPPRSSPSPPPPV---VSPPPPPPRASP 375
Query: 257 ----SFSNTPLETPISPTPATSP 313
+ S P P P+P SP
Sbjct: 376 PPPPASSPPPPPRPPPPSPPPSP 398
Score = 31.2 bits (69), Expect = 9.4
Identities = 19/51 (37%), Positives = 22/51 (42%)
Frame = +2
Query: 170 PSPNPVLHLPPPPPIGRDFPTPPPIPRSSSFSNTPLETPISPTPATSPLAS 322
P P P + PPPP+ P PPP S S P + SP P P S
Sbjct: 272 PPPPPRVPPSPPPPVASPPPPPPP---RVSPSPPPPQPVSSPPPPPPPRPS 319
>pir||S50755 hypothetical protein VSP-3 - Chlamydomonas reinhardtii
gi|530876|gb|AAB53953.1| amino acid feature: Rod protein
domain, aa 266 .. 468; amino acid feature: globular
protein domain, aa 32 .. 265
Length = 473
Score = 44.3 bits (103), Expect = 0.001
Identities = 31/77 (40%), Positives = 41/77 (52%)
Frame = +2
Query: 83 SPA*SPSLCLSNPMNFSTTKNSASKVDAHPSPNPVLHLPPPPPIGRDFPTPPPIPRSSSF 262
SP+ SPS S + S + ASK PSP+P P PP+ P+P P P S S
Sbjct: 322 SPSPSPSPKASPSPSPSPSVQPASKPSPSPSPSPSPSPRPSPPLPSPSPSPSPSP-SPSP 380
Query: 263 SNTPLETPISPTPATSP 313
S +P +P SP+P+ SP
Sbjct: 381 SPSPKPSP-SPSPSPSP 396
Score = 36.2 bits (82), Expect = 0.29
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +2
Query: 83 SPA*SPSLCLSNPMNFSTTKNSASKVDAHPSPNPVLHLPPPPPIGRDFPTPPPIPRSS-S 259
SP+ SP S S + + + K PSP+P P P P+P P P++S S
Sbjct: 280 SPSPSPKASPSPSPKASPSPSPSPKASPSPSPSPKASPSPSPS-----PSPSPSPKASPS 334
Query: 260 FSNTPLETPIS-PTPATSPLAS 322
S +P P S P+P+ SP S
Sbjct: 335 PSPSPSVQPASKPSPSPSPSPS 356
Score = 35.8 bits (81), Expect = 0.38
Identities = 27/94 (28%), Positives = 40/94 (41%), Gaps = 13/94 (13%)
Frame = +2
Query: 80 SSPA*SPSLCLSNPMNFSTTKNSASKVDAHPSPNPVLHLPPPP-------------PIGR 220
+SP+ SP S + + + + A PSP+P P P P +
Sbjct: 287 ASPSPSPKASPSPSPSPKASPSPSPSPKASPSPSPSPSPSPSPKASPSPSPSPSVQPASK 346
Query: 221 DFPTPPPIPRSSSFSNTPLETPISPTPATSPLAS 322
P+P P P S + PL +P SP+P+ SP S
Sbjct: 347 PSPSPSPSPSPSPRPSPPLPSP-SPSPSPSPSPS 379
Score = 35.8 bits (81), Expect = 0.38
Identities = 27/80 (33%), Positives = 34/80 (41%)
Frame = +2
Query: 83 SPA*SPSLCLSNPMNFSTTKNSASKVDAHPSPNPVLHLPPPPPIGRDFPTPPPIPRSSSF 262
SP SP L +P + S S PSP+P P P P + P+P P P S
Sbjct: 358 SPRPSPPLPSPSPSPSPSPSPSPSP-SPKPSPSPS---PSPSPSPKPSPSPSPSPSPSPS 413
Query: 263 SNTPLETPISPTPATSPLAS 322
SP+P+ SP AS
Sbjct: 414 PKVSPSPSPSPSPSPSPKAS 433
Score = 35.0 bits (79), Expect = 0.65
Identities = 28/82 (34%), Positives = 38/82 (46%)
Frame = +2
Query: 80 SSPA*SPSLCLSNPMNFSTTKNSASKVDAHPSPNPVLHLPPPPPIGRDFPTPPPIPRSSS 259
S P SPS S + S + + PSP+P P P P P+P P P+ S
Sbjct: 362 SPPLPSPSPSPSPSPSPSPSPSPKPSPSPSPSPSPS---PKPSPSPSPSPSPSPSPKVSP 418
Query: 260 FSNTPLETPISPTPATSPLASK 325
S +P +P SP+P SP +K
Sbjct: 419 -SPSPSPSP-SPSPKASPSPAK 438
Score = 32.3 bits (72), Expect = 4.2
Identities = 25/79 (31%), Positives = 38/79 (47%), Gaps = 15/79 (18%)
Frame = +2
Query: 131 STTKNSASKVDAHPSPNPVLHLPP-----------PPPIGRDFPTPPPIPRSS-SFSNTP 274
+ T + ++ A PSP+P P P P + P+P P P++S S S +P
Sbjct: 254 AVTLANFNRTGASPSPSPKASPSPKVSPSPSPKASPSPSPKASPSPSPSPKASPSPSPSP 313
Query: 275 LETPI---SPTPATSPLAS 322
+P SP+P+ SP AS
Sbjct: 314 KASPSPSPSPSPSPSPKAS 332
Score = 32.0 bits (71), Expect = 5.5
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +2
Query: 83 SPA*SPSLCLSNPMNFSTTKNSASKVDAHPSPNPVLHLPPPPPIGRDFPTPPPIPRSS-S 259
SP+ SPS + S + + + K PSP+P P P P P+P P P S
Sbjct: 375 SPSPSPSPSPKPSPSPSPSPSPSPKPSPSPSPSPS---PSPSPKVSPSPSPSPSPSPSPK 431
Query: 260 FSNTPLETPISPTP 301
S +P + P P P
Sbjct: 432 ASPSPAKKPSPPPP 445
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,517,530
Number of Sequences: 1393205
Number of extensions: 14016759
Number of successful extensions: 154627
Number of sequences better than 10.0: 2271
Number of HSP's better than 10.0 without gapping: 90323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130210
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
