Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018541A_C01 KMC018541A_c01
(534 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61173.1| unknown [Arabidopsis thaliana] 45 4e-04
gb|AAM13105.1| unknown protein [Arabidopsis thaliana] gi|2213627... 45 5e-04
ref|NP_568731.1| putative protein; protein id: At5g50570.1, supp... 45 5e-04
sp|P53667|LIK1_HUMAN LIM domain kinase 1 (LIMK-1) gi|1432164|gb|... 33 1.6
ref|NP_002305.1| LIM domain kinase 1 isoform 1; LIM motif-contai... 33 1.6
>gb|AAM61173.1| unknown [Arabidopsis thaliana]
Length = 336
Score = 45.4 bits (106), Expect = 4e-04
Identities = 35/127 (27%), Positives = 55/127 (42%), Gaps = 3/127 (2%)
Frame = -1
Query: 519 GDXYPHLPAASIGHKFGRPSPFAESDGLRCKNMFCDSLTSSVQESSCALSLLSSPQAHNT 340
G +P + + + PF + + C+ +TS + +S CALSLLSS +
Sbjct: 224 GIMFPISSSPNSTRSIAKQFPFLQEEESSRTASLCERMTSCIHDSDCALSLLSSSSSS-- 281
Query: 339 AGNGFNQMVNPHSSLMQPLGLSLHDNSMGPVYSGC---DDHCSSMYNVGSSGSQGNEAPS 169
PH L+QP LSL ++ V+ G ++ C+ SG++ P
Sbjct: 282 ---------VPH--LLQP-PLSLSQEAVETVFYGSGLFENACAVSDGSVISGNEAVRLPQ 329
Query: 168 MFPFQWE 148
FPF WE
Sbjct: 330 TFPFHWE 336
>gb|AAM13105.1| unknown protein [Arabidopsis thaliana] gi|22136276|gb|AAM91216.1|
unknown protein [Arabidopsis thaliana]
Length = 177
Score = 45.1 bits (105), Expect = 5e-04
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Frame = -1
Query: 519 GDXYPHLPAASIGHKFGRPSPFAESDGLRCKNMFCDSLTSSVQESSCALSLLSSPQAHNT 340
G +P + + + PF + + C+ +TS + +S CALSLLSS +
Sbjct: 65 GIMFPISSSPNSTRSIAKQFPFLQEEESSRTASLCERMTSCIHDSDCALSLLSSSSSS-- 122
Query: 339 AGNGFNQMVNPHSSLMQPLGLSLHDNSMGPVY--SGCDDHCSSMYNVGS--SGSQGNEAP 172
PH L+QP LSL ++ V+ SG ++ S++ + GS SG++ P
Sbjct: 123 ---------VPH--LLQP-PLSLSQEAVETVFYGSGLFENASAVSD-GSVISGNEAVRLP 169
Query: 171 SMFPFQWE 148
FPF WE
Sbjct: 170 QTFPFHWE 177
>ref|NP_568731.1| putative protein; protein id: At5g50570.1, supported by cDNA:
113229. [Arabidopsis thaliana]
gi|18423182|ref|NP_568740.1| putative protein; protein
id: At5g50670.1, supported by cDNA: 113229. [Arabidopsis
thaliana] gi|8777390|dbj|BAA96980.1| contains similarity
to squamosa promoter binding protein~gene_id:MFB16.6
[Arabidopsis thaliana] gi|9758766|dbj|BAB09142.1|
contains similarity to squamosa promoter binding
protein~gene_id:MBA10.13 [Arabidopsis thaliana]
gi|26450038|dbj|BAC42139.1| unknown protein [Arabidopsis
thaliana]
Length = 359
Score = 45.1 bits (105), Expect = 5e-04
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Frame = -1
Query: 519 GDXYPHLPAASIGHKFGRPSPFAESDGLRCKNMFCDSLTSSVQESSCALSLLSSPQAHNT 340
G +P + + + PF + + C+ +TS + +S CALSLLSS +
Sbjct: 247 GIMFPISSSPNSTRSIAKQFPFLQEEESSRTASLCERMTSCIHDSDCALSLLSSSSSS-- 304
Query: 339 AGNGFNQMVNPHSSLMQPLGLSLHDNSMGPVY--SGCDDHCSSMYNVGS--SGSQGNEAP 172
PH L+QP LSL ++ V+ SG ++ S++ + GS SG++ P
Sbjct: 305 ---------VPH--LLQP-PLSLSQEAVETVFYGSGLFENASAVSD-GSVISGNEAVRLP 351
Query: 171 SMFPFQWE 148
FPF WE
Sbjct: 352 QTFPFHWE 359
>sp|P53667|LIK1_HUMAN LIM domain kinase 1 (LIMK-1) gi|1432164|gb|AAB17545.1| LIM-kinase1
[Homo sapiens] gi|1657755|gb|AAC13885.1| LIM-kinase
[Homo sapiens]
Length = 647
Score = 33.5 bits (75), Expect = 1.6
Identities = 26/90 (28%), Positives = 38/90 (41%), Gaps = 2/90 (2%)
Frame = -1
Query: 450 ESDGLRCKNMFCDSLTSSVQESSCALSLLSSPQAHNTAGNGFNQMVNPHSS-LMQPLGLS 274
E +G +N+ D + +QE+S L L H+T G+G +P SS P G +
Sbjct: 225 EINGTPIRNVPLDEIDLLIQETSRLLQLTLEHDPHDTLGHGLGPETSPLSSPAYTPSGEA 284
Query: 273 LHDNSMGPVYSGCD-DHCSSMYNVGSSGSQ 187
PV C D ++GS SQ
Sbjct: 285 GSSARQKPVLRSCSIDRSPGAGSLGSPASQ 314
>ref|NP_002305.1| LIM domain kinase 1 isoform 1; LIM motif-containing protein kinase
[Homo sapiens] gi|1082573|pir||JP0078 LIM protein kinase
(EC 2.7.1.-) 1 - human gi|565280|dbj|BAA05371.1| LIM
kinase [Homo sapiens]
Length = 647
Score = 33.5 bits (75), Expect = 1.6
Identities = 26/90 (28%), Positives = 38/90 (41%), Gaps = 2/90 (2%)
Frame = -1
Query: 450 ESDGLRCKNMFCDSLTSSVQESSCALSLLSSPQAHNTAGNGFNQMVNPHSS-LMQPLGLS 274
E +G +N+ D + +QE+S L L H+T G+G +P SS P G +
Sbjct: 225 EINGTPIRNVPLDEIDLLIQETSRLLQLTLEHDPHDTLGHGLGPETSPLSSPAYTPSGEA 284
Query: 273 LHDNSMGPVYSGCD-DHCSSMYNVGSSGSQ 187
PV C D ++GS SQ
Sbjct: 285 GSSARQKPVLRSCSIDRSPGAGSLGSPASQ 314
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 520,976,424
Number of Sequences: 1393205
Number of extensions: 11838031
Number of successful extensions: 24256
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 23576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24248
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
