Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018539A_C01 KMC018539A_c01
(606 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200633.1| similar to unknown protein (sp|P72777); protein... 123 2e-27
ref|ZP_00115251.1| hypothetical protein [Synechococcus sp. WH 8102] 43 0.004
gb|ZP_00111586.1| hypothetical protein [Nostoc punctiforme] 40 0.018
ref|ZP_00074102.1| hypothetical protein [Trichodesmium erythraeu... 38 0.12
ref|NP_682289.1| ORF_ID:tll1499~hypothetical protein [Thermosyne... 37 0.15
>ref|NP_200633.1| similar to unknown protein (sp|P72777); protein id: At5g58250.1
[Arabidopsis thaliana] gi|8777326|dbj|BAA96916.1|
gene_id:MCK7.12~similar to unknown protein~sp|P72777
[Arabidopsis thaliana]
Length = 211
Score = 123 bits (308), Expect = 2e-27
Identities = 57/78 (73%), Positives = 65/78 (83%)
Frame = -1
Query: 606 RLGRPAVALVSTHGPWITYMKLRLDRVLSESFEAESIEEALASNPTNLDFGKPDKWVAPY 427
RL RPAVALVST+G WIT+MKLRLDRVL +SFEA S++EALASNPT L+F KP WVAPY
Sbjct: 131 RLRRPAVALVSTNGTWITFMKLRLDRVLYDSFEATSLDEALASNPTTLEFDKPKNWVAPY 190
Query: 426 PKYESGWWETFLLPAQKE 373
PKYE GWW+TFL +E
Sbjct: 191 PKYEPGWWDTFLPKVTQE 208
>ref|ZP_00115251.1| hypothetical protein [Synechococcus sp. WH 8102]
Length = 107
Score = 42.7 bits (99), Expect = 0.004
Identities = 25/45 (55%), Positives = 33/45 (72%), Gaps = 2/45 (4%)
Frame = -1
Query: 606 RLGRPAVALVSTHGPWITYMKLRLDRVLSESFEAES--IEEALAS 478
+L +PA A+VST +IT++KLRL+ VL SFEA S I +ALAS
Sbjct: 60 QLPKPAAAVVSTDPTFITFLKLRLEYVLEGSFEAPSAAIPDALAS 104
>gb|ZP_00111586.1| hypothetical protein [Nostoc punctiforme]
Length = 122
Score = 40.4 bits (93), Expect = 0.018
Identities = 21/45 (46%), Positives = 35/45 (77%), Gaps = 2/45 (4%)
Frame = -1
Query: 597 RPAVALVSTHGPWITYMKLRLDRVLSESFEA--ESIEEALASNPT 469
+P+VA++ST+ +IT++KLRL+ V++ F+A E+I +ALAS T
Sbjct: 76 QPSVAIISTNPQFITWLKLRLEYVITGEFQAPSETIPDALASLAT 120
>ref|ZP_00074102.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 115
Score = 37.7 bits (86), Expect = 0.12
Identities = 20/45 (44%), Positives = 34/45 (75%), Gaps = 2/45 (4%)
Frame = -1
Query: 597 RPAVALVSTHGPWITYMKLRLDRVLSESFEA--ESIEEALASNPT 469
+PA A++ST+ +I ++KLRL+ V++ +F+A E+I E LAS+ T
Sbjct: 65 QPAAAIISTNRQFIDWLKLRLEFVITGAFQAPSETIPEPLASSIT 109
>ref|NP_682289.1| ORF_ID:tll1499~hypothetical protein [Thermosynechococcus elongatus
BP-1] gi|22295224|dbj|BAC09051.1|
ORF_ID:tll1499~hypothetical protein [Thermosynechococcus
elongatus BP-1]
Length = 106
Score = 37.4 bits (85), Expect = 0.15
Identities = 18/43 (41%), Positives = 28/43 (64%)
Frame = -1
Query: 606 RLGRPAVALVSTHGPWITYMKLRLDRVLSESFEAESIEEALAS 478
R +PA A++ST+ +I ++KLRL+ VL F +E + LAS
Sbjct: 60 RCPQPAAAIISTNQQFIQWLKLRLEYVLMGQFTSEEVPNPLAS 102
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 525,981,620
Number of Sequences: 1393205
Number of extensions: 11317080
Number of successful extensions: 24232
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24225
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
