Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018537A_C01 KMC018537A_c01
(884 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175640.1| 60S ribosomal protein L37, putative; protein id... 173 3e-42
ref|NP_566535.1| putative ribosomal protein; protein id: At3g160... 172 8e-42
ref|NP_172977.1| putative 60s ribosomal protein L37; protein id:... 169 4e-41
sp|Q90YT1|RL37_ICTPU 60S ribosomal protein L37 gi|15293945|gb|AA... 131 1e-29
ref|NP_573005.1| CG9091-PA [Drosophila melanogaster] gi|20139854... 131 1e-29
>ref|NP_175640.1| 60S ribosomal protein L37, putative; protein id: At1g52300.1,
supported by cDNA: gi_13877906, supported by cDNA:
gi_21280804 [Arabidopsis thaliana]
gi|20143906|sp|Q43292|RL37_ARATH 60S ribosomal protein
L37 gi|25295102|pir||B96563 hypothetical protein
F19K6.12 [imported] - Arabidopsis thaliana
gi|12323122|gb|AAG51542.1|AC037424_7 60S ribosomal
protein L37, putative; 56921-57860 [Arabidopsis
thaliana] gi|13877907|gb|AAK44031.1|AF370216_1 putative
60S ribosomal protein L37 [Arabidopsis thaliana]
gi|21280805|gb|AAM44969.1| putative 60S ribosomal
protein L37 [Arabidopsis thaliana]
Length = 95
Score = 173 bits (439), Expect = 3e-42
Identities = 79/93 (84%), Positives = 88/93 (93%)
Frame = -2
Query: 505 EGNRSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVQAIRRKTTGTG 326
+G SFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACA+PAARKR YNWSV+AIRRKTTGTG
Sbjct: 3 KGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGTG 62
Query: 325 RMRYLRNVPRRFKSGFREGTEAAPRNKGAAATA 227
RMRYLRNVPRRFK+GFREGTEA PRNKG A++A
Sbjct: 63 RMRYLRNVPRRFKTGFREGTEAKPRNKGVASSA 95
>ref|NP_566535.1| putative ribosomal protein; protein id: At3g16080.1, supported by
cDNA: 14710. [Arabidopsis thaliana]
gi|21553481|gb|AAM62574.1| putative ribosomal protein
[Arabidopsis thaliana]
Length = 95
Score = 172 bits (435), Expect = 8e-42
Identities = 78/94 (82%), Positives = 89/94 (93%)
Frame = -2
Query: 508 GEGNRSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVQAIRRKTTGT 329
G+G SFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACA+PAARKR YNWSV+AIRRKTTGT
Sbjct: 2 GKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGT 61
Query: 328 GRMRYLRNVPRRFKSGFREGTEAAPRNKGAAATA 227
GRMRYLRNVPRRFK+GFREGTEA PR+K +A++A
Sbjct: 62 GRMRYLRNVPRRFKTGFREGTEAKPRSKASASSA 95
>ref|NP_172977.1| putative 60s ribosomal protein L37; protein id: At1g15250.1,
supported by cDNA: 11912. [Arabidopsis thaliana]
gi|21537060|gb|AAM61401.1| putative 60s ribosomal
protein L37 [Arabidopsis thaliana]
gi|26452539|dbj|BAC43354.1| putative 60s ribosomal
protein L37 [Arabidopsis thaliana]
gi|28827304|gb|AAO50496.1| putative 60s ribosomal
protein L37 [Arabidopsis thaliana]
Length = 95
Score = 169 bits (429), Expect = 4e-41
Identities = 77/94 (81%), Positives = 88/94 (92%)
Frame = -2
Query: 508 GEGNRSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVQAIRRKTTGT 329
G+G SFGKRRNK+HTLCVRCGRRSFH+QKSRC+ACA+PAARKR YNWSV+AIRRKTTGT
Sbjct: 2 GKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTGT 61
Query: 328 GRMRYLRNVPRRFKSGFREGTEAAPRNKGAAATA 227
GRMRYLRNVPRRFK+ FREGT+A PRNK AA+++
Sbjct: 62 GRMRYLRNVPRRFKTCFREGTQATPRNKAAASSS 95
>sp|Q90YT1|RL37_ICTPU 60S ribosomal protein L37 gi|15293945|gb|AAK95165.1|AF401593_1
ribosomal protein L37 [Ictalurus punctatus]
Length = 97
Score = 131 bits (330), Expect = 1e-29
Identities = 59/93 (63%), Positives = 72/93 (76%)
Frame = -2
Query: 505 EGNRSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVQAIRRKTTGTG 326
+G SFGKRRNKTHTLC RCG +++HLQKS C C +PA RKRKYNWS +A RR TTGTG
Sbjct: 3 KGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSAKAKRRSTTGTG 62
Query: 325 RMRYLRNVPRRFKSGFREGTEAAPRNKGAAATA 227
RMR+++ V RRF++GFREGT PR AA++
Sbjct: 63 RMRHMKVVFRRFRNGFREGTVPKPRRAAVAASS 95
>ref|NP_573005.1| CG9091-PA [Drosophila melanogaster]
gi|20139854|sp|Q9VXX8|R37A_DROME Probable 60S ribosomal
protein L37-A gi|7293042|gb|AAF48428.1| CG9091-PA
[Drosophila melanogaster]
Length = 93
Score = 131 bits (330), Expect = 1e-29
Identities = 59/90 (65%), Positives = 73/90 (80%)
Frame = -2
Query: 505 EGNRSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARKRKYNWSVQAIRRKTTGTG 326
+G SFGKR NKTHTLC RCGR S+H+QKS CA C +PAA+ R YNWSV+A RRKTTGTG
Sbjct: 3 KGTSSFGKRHNKTHTLCRRCGRSSYHIQKSTCAQCGYPAAKLRSYNWSVKAKRRKTTGTG 62
Query: 325 RMRYLRNVPRRFKSGFREGTEAAPRNKGAA 236
RM++L+ V RRF++GFREGT+A P+ A+
Sbjct: 63 RMQHLKVVRRRFRNGFREGTQAKPKKAVAS 92
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 834,040,011
Number of Sequences: 1393205
Number of extensions: 20352199
Number of successful extensions: 62621
Number of sequences better than 10.0: 175
Number of HSP's better than 10.0 without gapping: 58103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62521
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 47939536764
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
