Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018536A_C01 KMC018536A_c01
(604 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181755.1| hypothetical protein; protein id: At2g42260.1 [... 77 2e-13
ref|NP_191345.1| putative protein; protein id: At3g57860.1 [Arab... 76 4e-13
pir||T05737 probable hordein C - barley gi|893242|gb|AAA92333.1|... 38 0.088
gb|EAA27192.1| predicted protein [Neurospora crassa] 37 0.15
ref|XP_209582.1| hypothetical protein XP_209582 [Homo sapiens] 36 0.44
>ref|NP_181755.1| hypothetical protein; protein id: At2g42260.1 [Arabidopsis
thaliana] gi|7487412|pir||T00935 hypothetical protein
At2g42260 [imported] - Arabidopsis thaliana
gi|2673916|gb|AAB88650.1| hypothetical protein
[Arabidopsis thaliana] gi|28950705|gb|AAO63276.1|
At2g42260 [Arabidopsis thaliana]
Length = 259
Score = 77.0 bits (188), Expect = 2e-13
Identities = 40/67 (59%), Positives = 53/67 (78%), Gaps = 1/67 (1%)
Frame = -3
Query: 587 SKVPKIVLEIA-EDGDDSEFLTPQKKLLESIDTVEKVVREELQRLKRTPMGRRPEREKRV 411
+KV +I+L+I E+ + + LTP+KKLL SID VEKVV EE+Q++K TP +R EREKRV
Sbjct: 193 AKVHQILLDITRENTGEEDALTPEKKLLNSIDKVEKVVMEEIQKMKSTPSAKRAEREKRV 252
Query: 410 KTLMSMR 390
+TLMSMR
Sbjct: 253 RTLMSMR 259
>ref|NP_191345.1| putative protein; protein id: At3g57860.1 [Arabidopsis thaliana]
gi|11282411|pir||T46008 hypothetical protein T10K17.70 -
Arabidopsis thaliana gi|6729529|emb|CAB67614.1| putative
protein [Arabidopsis thaliana]
gi|28393730|gb|AAO42276.1| unknown protein [Arabidopsis
thaliana] gi|28973331|gb|AAO63990.1| unknown protein
[Arabidopsis thaliana]
Length = 243
Score = 75.9 bits (185), Expect = 4e-13
Identities = 38/68 (55%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Frame = -3
Query: 587 SKVPKIVLEIAEDGDDSE--FLTPQKKLLESIDTVEKVVREELQRLKRTPMGRRPEREKR 414
+KV K++L+I ++ + E F+TP+KKLL SID VEK+V E+Q+LK TP +R EREKR
Sbjct: 176 AKVQKMLLDITKEIAEEEAGFITPEKKLLNSIDKVEKIVMAEIQKLKSTPQAKREEREKR 235
Query: 413 VKTLMSMR 390
V+TLM+MR
Sbjct: 236 VRTLMTMR 243
>pir||T05737 probable hordein C - barley gi|893242|gb|AAA92333.1| C hordein
Length = 347
Score = 38.1 bits (87), Expect = 0.088
Identities = 19/54 (35%), Positives = 26/54 (47%)
Frame = +2
Query: 407 FSPFSPSLAFYPSESSSTSEALPSQPSQPYQLTPEASSEE*ETPNHPRPQQFQE 568
F P+ P F PS+ + P QP QP+ L P+ + P P PQQ Q+
Sbjct: 65 FFPYLPQQTFPPSQQPN-----PLQPQQPFPLQPQPPQQPFPQPQQPNPQQPQQ 113
>gb|EAA27192.1| predicted protein [Neurospora crassa]
Length = 1997
Score = 37.4 bits (85), Expect = 0.15
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Frame = +2
Query: 272 PISAHPHS*IYALSSMGCAIISNLPSSTLAQPCSVISHFTSLTLAFSPFSPSL----AFY 439
P + S + LSS A+IS+ PS S + +S TLA P++ A
Sbjct: 1576 PAPSSESSTVLMLSSSTLAVISSAPSVPSPSDSSTVLMLSSSTLAVISSEPAIPSVVAPE 1635
Query: 440 PSESSSTSEALPSQPSQPYQLTPEASSEE*ETPNHP 547
P+ ++S +A+P+ ++P + T AS + P P
Sbjct: 1636 PASTASGEQAIPTLTAEPAEPTSAASGGQPIEPTEP 1671
>ref|XP_209582.1| hypothetical protein XP_209582 [Homo sapiens]
Length = 252
Score = 35.8 bits (81), Expect = 0.44
Identities = 29/91 (31%), Positives = 42/91 (45%), Gaps = 8/91 (8%)
Frame = +2
Query: 335 SNLPSSTLAQPCSVISHFTSLTLAFSPFSPSLA--------FYPSESSSTSEALPSQPSQ 490
S+ PSS+ + P S S +S + + S SPS + PS SSS+ + S PS
Sbjct: 143 SSSPSSSSSSPSSSSSSSSSSSSSPSSSSPSSSGSSPSSSNSSPSSSSSSPSSSSSSPS- 201
Query: 491 PYQLTPEASSEE*ETPNHPRPQQFQEQSSAP 583
P +P +SS +P+ P SS P
Sbjct: 202 PRSSSPSSSSSSTSSPSSSSPSSSSPSSSCP 232
Score = 32.0 bits (71), Expect = 6.3
Identities = 26/89 (29%), Positives = 41/89 (45%)
Frame = +2
Query: 335 SNLPSSTLAQPCSVISHFTSLTLAFSPFSPSLAFYPSESSSTSEALPSQPSQPYQLTPEA 514
S+ PSS+ + S S +S + + S S + PS SSS+S + PS S + +
Sbjct: 100 SSSPSSSNSSSSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSS 159
Query: 515 SSEE*ETPNHPRPQQFQEQSSAPCCTGSS 601
SS +P+ P S+P + SS
Sbjct: 160 SSSSSSSPSSSSP---SSSGSSPSSSNSS 185
Score = 31.6 bits (70), Expect = 8.3
Identities = 27/97 (27%), Positives = 41/97 (41%)
Frame = +2
Query: 311 SSMGCAIISNLPSSTLAQPCSVISHFTSLTLAFSPFSPSLAFYPSESSSTSEALPSQPSQ 490
SS + S+ PSS+ + S TS + S S S + SSS+S + PS S
Sbjct: 63 SSPSSSPSSSSPSSSHSSSSPSSSSSTSSPSSSSSSSSSSPSSSNSSSSSSSSSPSSSSS 122
Query: 491 PYQLTPEASSEE*ETPNHPRPQQFQEQSSAPCCTGSS 601
+P +SS + + SS+P + SS
Sbjct: 123 SSSSSPSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSS 159
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,832,955
Number of Sequences: 1393205
Number of extensions: 10535595
Number of successful extensions: 36144
Number of sequences better than 10.0: 103
Number of HSP's better than 10.0 without gapping: 32834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35567
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
