Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018535A_C01 KMC018535A_c01
(481 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA77204.1| ring finger protein [Cicer arietinum] 131 3e-30
ref|NP_186883.1| RING zinc-finger protein, putative; protein id:... 108 2e-23
ref|NP_197086.1| putative protein; protein id: At5g15820.1, supp... 102 2e-21
ref|NP_568188.1| Expressed protein; protein id: At5g08140.1, sup... 96 3e-19
gb|AAL25539.1| AT5g08140/T22D6_80 [Arabidopsis thaliana] gi|2350... 96 3e-19
>dbj|BAA77204.1| ring finger protein [Cicer arietinum]
Length = 131
Score = 131 bits (330), Expect = 3e-30
Identities = 54/62 (87%), Positives = 60/62 (96%)
Frame = -3
Query: 479 RGKDMACAICKDEIMLEEKVRRLPCSHCYHGDCILPWLSIRNTCPVCRFELPTDDPDYEQ 300
+GKD+ CA+CKDE+MLEEKVR+LPCSHCYHGDCILPWLSIRNTCPVCRFELPTDD DYE+
Sbjct: 70 KGKDIVCAVCKDEVMLEEKVRKLPCSHCYHGDCILPWLSIRNTCPVCRFELPTDDADYER 129
Query: 299 SK 294
SK
Sbjct: 130 SK 131
>ref|NP_186883.1| RING zinc-finger protein, putative; protein id: At3g02340.1
[Arabidopsis thaliana]
gi|10092183|gb|AAG12602.1|AC068900_8 RING zinc-finger
protein, putative; 7563-8792 [Arabidopsis thaliana]
Length = 409
Score = 108 bits (271), Expect = 2e-23
Identities = 45/65 (69%), Positives = 54/65 (82%)
Frame = -3
Query: 461 CAICKDEIMLEEKVRRLPCSHCYHGDCILPWLSIRNTCPVCRFELPTDDPDYEQSKIEGA 282
CA+CKDE+++EEKVRRLPCSH YHG+CI+PWL IRNTCPVCR+ELPTDD +YE+ K
Sbjct: 335 CAVCKDEMLVEEKVRRLPCSHFYHGECIIPWLGIRNTCPVCRYELPTDDLEYERHKSSER 394
Query: 281 AAHGL 267
GL
Sbjct: 395 GDTGL 399
>ref|NP_197086.1| putative protein; protein id: At5g15820.1, supported by cDNA:
gi_16323124 [Arabidopsis thaliana]
gi|11357424|pir||T51411 hypothetical protein F14F8_200 -
Arabidopsis thaliana gi|9755627|emb|CAC01781.1| putative
protein [Arabidopsis thaliana]
gi|16323125|gb|AAL15297.1| AT5g15820/F14F8_200
[Arabidopsis thaliana] gi|21360417|gb|AAM47324.1|
AT5g15820/F14F8_200 [Arabidopsis thaliana]
Length = 348
Score = 102 bits (255), Expect = 2e-21
Identities = 40/58 (68%), Positives = 50/58 (85%)
Frame = -3
Query: 467 MACAICKDEIMLEEKVRRLPCSHCYHGDCILPWLSIRNTCPVCRFELPTDDPDYEQSK 294
+ CAICKDE++ +EKV+RLPC H YHG+CI+PWL IRNTCPVCR ELPTDD +YE+ +
Sbjct: 289 IVCAICKDEVVFKEKVKRLPCKHYYHGECIIPWLGIRNTCPVCRHELPTDDLEYERKR 346
>ref|NP_568188.1| Expressed protein; protein id: At5g08140.1, supported by cDNA:
gi_16648692 [Arabidopsis thaliana]
gi|26450393|dbj|BAC42311.1| unknown protein [Arabidopsis
thaliana]
Length = 376
Score = 95.5 bits (236), Expect = 3e-19
Identities = 36/60 (60%), Positives = 48/60 (80%)
Frame = -3
Query: 467 MACAICKDEIMLEEKVRRLPCSHCYHGDCILPWLSIRNTCPVCRFELPTDDPDYEQSKIE 288
+ CA+CKDE+ + K +LPC+H YH +CI+PWL +RNTCPVCR+ELPTDD +YEQ K +
Sbjct: 307 LVCAVCKDEMNIGNKAVQLPCNHKYHSECIVPWLKVRNTCPVCRYELPTDDAEYEQRKTQ 366
>gb|AAL25539.1| AT5g08140/T22D6_80 [Arabidopsis thaliana]
gi|23507797|gb|AAN38702.1| At5g08140/T22D6_80
[Arabidopsis thaliana]
Length = 376
Score = 95.5 bits (236), Expect = 3e-19
Identities = 36/60 (60%), Positives = 48/60 (80%)
Frame = -3
Query: 467 MACAICKDEIMLEEKVRRLPCSHCYHGDCILPWLSIRNTCPVCRFELPTDDPDYEQSKIE 288
+ CA+CKDE+ + K +LPC+H YH +CI+PWL +RNTCPVCR+ELPTDD +YEQ K +
Sbjct: 307 LVCAVCKDEMNIGNKAVQLPCNHKYHSECIVPWLKVRNTCPVCRYELPTDDAEYEQRKTQ 366
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 440,042,361
Number of Sequences: 1393205
Number of extensions: 9474353
Number of successful extensions: 24976
Number of sequences better than 10.0: 1140
Number of HSP's better than 10.0 without gapping: 23893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24821
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
