Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018534A_C01 KMC018534A_c01
(541 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB81548.2| putative proline-rich protein APG isolog [Cicer ... 220 7e-57
ref|NP_683387.1| similar to putative APG protein, 5' partial; pr... 200 1e-50
ref|NP_188258.1| putative APG protein; protein id: At3g16370.1, ... 200 1e-50
gb|AAB63641.1| Proline-rich protein APG isolog [Arabidopsis thal... 200 1e-50
ref|NP_197672.1| GDSL-motif lipase/hydrolase-like protein; prote... 160 7e-39
>emb|CAB81548.2| putative proline-rich protein APG isolog [Cicer arietinum]
Length = 350
Score = 220 bits (561), Expect = 7e-57
Identities = 106/118 (89%), Positives = 111/118 (93%)
Frame = -2
Query: 540 ENGCVSRFNTDAQAFNKKINSAAAKLQKQHPGLKIVIFDIYKPLYDLVQTPSNFGFAEAR 361
ENGCVSR NTDAQ FNKK+NSAA+ LQKQ PGLKIVIFDIYKPLYDLVQ PSN GFAEA
Sbjct: 232 ENGCVSRINTDAQGFNKKVNSAASNLQKQLPGLKIVIFDIYKPLYDLVQNPSNSGFAEAG 291
Query: 360 RGCCGTGTVETTSLLCNPKSIGTCSNATQYVFWDSVHPSEAANQVLADALILQGIALI 187
RGCCGTGTVETTSLLCNPKSIGTCSNATQYVFWDSVHPS+AANQVLAD+L+LQGIALI
Sbjct: 292 RGCCGTGTVETTSLLCNPKSIGTCSNATQYVFWDSVHPSQAANQVLADSLLLQGIALI 349
>ref|NP_683387.1| similar to putative APG protein, 5' partial; protein id:
At1g45204.1 [Arabidopsis thaliana]
Length = 273
Score = 200 bits (508), Expect = 1e-50
Identities = 94/119 (78%), Positives = 104/119 (86%)
Frame = -2
Query: 540 ENGCVSRFNTDAQAFNKKINSAAAKLQKQHPGLKIVIFDIYKPLYDLVQTPSNFGFAEAR 361
E GCVSR NTDAQ FNKK+N+AA+KLQKQ+ LKIV+FDIY PLYDLVQ PS GF EA
Sbjct: 155 EKGCVSRLNTDAQNFNKKLNAAASKLQKQYSDLKIVVFDIYSPLYDLVQNPSKSGFTEAT 214
Query: 360 RGCCGTGTVETTSLLCNPKSIGTCSNATQYVFWDSVHPSEAANQVLADALILQGIALIG 184
+GCCGTGTVETTSLLCNPKS GTCSNATQYVFWDSVHPSEAAN++LA ALI QG +L+G
Sbjct: 215 KGCCGTGTVETTSLLCNPKSFGTCSNATQYVFWDSVHPSEAANEILATALIGQGFSLLG 273
>ref|NP_188258.1| putative APG protein; protein id: At3g16370.1, supported by cDNA:
gi_18700185 [Arabidopsis thaliana]
gi|9279719|dbj|BAB01276.1| proline-rich protein
APG-like; GDSL-motif lipase/hydrolase-like protein
[Arabidopsis thaliana] gi|18700186|gb|AAL77704.1|
AT3g16370/MYA6_18 [Arabidopsis thaliana]
gi|27363212|gb|AAO11525.1| At3g16370/MYA6_18
[Arabidopsis thaliana]
Length = 353
Score = 200 bits (508), Expect = 1e-50
Identities = 94/119 (78%), Positives = 104/119 (86%)
Frame = -2
Query: 540 ENGCVSRFNTDAQAFNKKINSAAAKLQKQHPGLKIVIFDIYKPLYDLVQTPSNFGFAEAR 361
E GCVSR NTDAQ FNKK+N+AA+KLQKQ+ LKIV+FDIY PLYDLVQ PS GF EA
Sbjct: 235 EKGCVSRLNTDAQNFNKKLNAAASKLQKQYSDLKIVVFDIYSPLYDLVQNPSKSGFTEAT 294
Query: 360 RGCCGTGTVETTSLLCNPKSIGTCSNATQYVFWDSVHPSEAANQVLADALILQGIALIG 184
+GCCGTGTVETTSLLCNPKS GTCSNATQYVFWDSVHPSEAAN++LA ALI QG +L+G
Sbjct: 295 KGCCGTGTVETTSLLCNPKSFGTCSNATQYVFWDSVHPSEAANEILATALIGQGFSLLG 353
>gb|AAB63641.1| Proline-rich protein APG isolog [Arabidopsis thaliana]
Length = 322
Score = 200 bits (508), Expect = 1e-50
Identities = 94/119 (78%), Positives = 104/119 (86%)
Frame = -2
Query: 540 ENGCVSRFNTDAQAFNKKINSAAAKLQKQHPGLKIVIFDIYKPLYDLVQTPSNFGFAEAR 361
E GCVSR NTDAQ FNKK+N+AA+KLQKQ+ LKIV+FDIY PLYDLVQ PS GF EA
Sbjct: 204 EKGCVSRLNTDAQNFNKKLNAAASKLQKQYSDLKIVVFDIYSPLYDLVQNPSKSGFTEAT 263
Query: 360 RGCCGTGTVETTSLLCNPKSIGTCSNATQYVFWDSVHPSEAANQVLADALILQGIALIG 184
+GCCGTGTVETTSLLCNPKS GTCSNATQYVFWDSVHPSEAAN++LA ALI QG +L+G
Sbjct: 264 KGCCGTGTVETTSLLCNPKSFGTCSNATQYVFWDSVHPSEAANEILATALIGQGFSLLG 322
>ref|NP_197672.1| GDSL-motif lipase/hydrolase-like protein; protein id: At5g22810.1
[Arabidopsis thaliana] gi|10177228|dbj|BAB10602.1|
GDSL-motif lipase/hydrolase-like protein [Arabidopsis
thaliana]
Length = 337
Score = 160 bits (406), Expect = 7e-39
Identities = 72/118 (61%), Positives = 93/118 (78%)
Frame = -2
Query: 540 ENGCVSRFNTDAQAFNKKINSAAAKLQKQHPGLKIVIFDIYKPLYDLVQTPSNFGFAEAR 361
E GC + N DA +FN K+N+ + L++ GL +V+FDIY+PLYDL PS FGFAEAR
Sbjct: 220 EGGCSEKLNNDAISFNNKLNTTSQDLKRNLIGLNLVVFDIYQPLYDLATRPSEFGFAEAR 279
Query: 360 RGCCGTGTVETTSLLCNPKSIGTCSNATQYVFWDSVHPSEAANQVLADALILQGIALI 187
R CCGTG +E TS+LCNPKS+GTC+NAT+YVFWD HP+EAAN++LAD L++ GI+LI
Sbjct: 280 RACCGTGLLE-TSILCNPKSVGTCNNATEYVFWDGFHPTEAANKILADNLLVSGISLI 336
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,551,069
Number of Sequences: 1393205
Number of extensions: 9126610
Number of successful extensions: 26246
Number of sequences better than 10.0: 264
Number of HSP's better than 10.0 without gapping: 25393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26037
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
