Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018533A_C01 KMC018533A_c01
(685 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196645.1| endomembrane protein 70, putative; protein id: ... 39 0.067
gb|AAF63197.1| serine protease A precursor [Kytococcus sedentarius] 36 0.56
ref|XP_161540.1| hypothetical protein XP_161540 [Mus musculus] 35 0.96
emb|CAC48360.1| peptide synthetase [Amycolatopsis mediterranei] 33 2.8
ref|NP_295016.1| molybdenum cofactor biosynthesis protein B [Dei... 33 3.7
>ref|NP_196645.1| endomembrane protein 70, putative; protein id: At5g10840.1
[Arabidopsis thaliana] gi|11281523|pir||T50793
hypothetical protein T30N20_110 - Arabidopsis thaliana
gi|8979718|emb|CAB96839.1| putative protein [Arabidopsis
thaliana]
Length = 639
Score = 38.9 bits (89), Expect = 0.067
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = +1
Query: 514 SRALVILLPLLFIYGGVCFYLPGLVPQDFQK 606
S + L+ LLFI+G FYLPG+ PQDF+K
Sbjct: 16 SGCAIALIFLLFIHGAHSFYLPGVAPQDFEK 46
>gb|AAF63197.1| serine protease A precursor [Kytococcus sedentarius]
Length = 580
Score = 35.8 bits (81), Expect = 0.56
Identities = 22/58 (37%), Positives = 29/58 (49%)
Frame = +3
Query: 117 SSRVHGCVVPIVEAHPRRASVIYLHRRF*ATATPPTLAGVESEPKLRLATVRATGDGG 290
S V G +E +P ASV + ++ATP T+ GV P L L T+ TG GG
Sbjct: 363 SPHVAGGAALYLEKNPN-ASVSQVTNALKSSATPNTITGVNGSPNLMLNTIALTGGGG 419
>ref|XP_161540.1| hypothetical protein XP_161540 [Mus musculus]
Length = 501
Score = 35.0 bits (79), Expect = 0.96
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = +2
Query: 65 LRSSRVEGEPKEMGRFNIISCSWLCRSHRRSPSPPRIGHLSSPP 196
LR R E K R +ISC++ C+ HRR P PP L++PP
Sbjct: 50 LRKERERTESKTSWRPTVISCTF-CKCHRREPPPP-APELTAPP 91
>emb|CAC48360.1| peptide synthetase [Amycolatopsis mediterranei]
Length = 3165
Score = 33.5 bits (75), Expect = 2.8
Identities = 26/99 (26%), Positives = 41/99 (41%)
Frame = +3
Query: 117 SSRVHGCVVPIVEAHPRRASVIYLHRRF*ATATPPTLAGVESEPKLRLATVRATGDGGHK 296
S+ VH ++ RR V++ PP LAG+ES P L + V
Sbjct: 839 STVVHAAWAMVLARLTRRTDVVFGTM---VATRPPELAGIESMPGLLMTAVPVR----VP 891
Query: 297 IDAGHDLIDALTHQISKLHSSSRSSIIAASAMMKSEGFG 413
+D G ++D LT S+ + R + + K+ G G
Sbjct: 892 LDGGQSVLDMLTDLHSRQTALKRHQYLGLPEIQKAAGPG 930
>ref|NP_295016.1| molybdenum cofactor biosynthesis protein B [Deinococcus
radiodurans] gi|7473147|pir||B75414 molybdenum cofactor
biosynthesis protein B - Deinococcus radiodurans (strain
R1) gi|6459039|gb|AAF10862.1|AE001976_5 molybdenum
cofactor biosynthesis protein B [Deinococcus
radiodurans]
Length = 272
Score = 33.1 bits (74), Expect = 3.7
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 157 PIPA-AHRSSIFTAVSEPPRHHQPSPVLKANPNSDW 261
P+PA A R ++FT +S PP P L A P SDW
Sbjct: 186 PVPAPAAREALFTDLSSPPPLDVPGTPLPAAPASDW 221
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 618,247,832
Number of Sequences: 1393205
Number of extensions: 14283525
Number of successful extensions: 44298
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 41420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44225
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30552968016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
