>KMC018531A_C01 KMC018531A_c01
gaaaaactgcgCTAGAATAGTTCGATTTTCAACTCATTAATCTCACGAGAGATTATCATG
GTCATCCAAATGTCAAATAACAAAAAAACAAGATAGCAAGTTACAAGCCTTCATTACAAT
TAAGCAGACGGGTTAATTTCATAAGTAGCTTTAGGAGCCCAAGTTTCATCAGGGCTTCAA
CAAAAGCAGCTATCAAATCTCCGTTCTTCCGTGACAATCATCAGGCTTGTAACAAAATGA
CAAGAGATTTAGTGGATCTTTCAGTATCCGAACAAAGCCAGAGCAATTCAAGTTGAAGCT
TAACATGATAATATCAAACATGTCAGACAAAACAAATAAAAGGCAGCCAAAAAATTAATA
AAATTTATCACAAGAACATAAGATTTCTCATTCAAACCAAAAACAACGCAGCCCAATAAA
ATTGGACATAAATGATAATCGAAATTAAAGACTGCTGGCACGGTCAAATGTAACACAAGA
GACAATTAATTCAGAGTAAGATGTGGCCTCAGAGGTAGTGACAATTGCGATATCATCATA
GAGTAATCTGTTAATACGTGCAT

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC018531A_C01 KMC018531A_c01
         (563 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_341999.1| Integral membrane protein, putative [Sulfolobus...    34  1.1
gb|AAA31881.1| A 'c' was inserted after nt 369 (=nt 10459 in gen...    33  2.4
pir||C30010 hypothetical ORF-6 protein - Leishmania tarentolae m...    33  2.4
gb|EAA06872.1| agCP7398 [Anopheles gambiae str. PEST]                  32  4.2
ref|NP_788834.1| CD97 antigen [Bos taurus] gi|19170724|emb|CAC94...    31  9.3

>ref|NP_341999.1| Integral membrane protein, putative [Sulfolobus solfataricus]
           gi|25392929|pir||F90191 integral membrane protein,
           probable [imported] - Sulfolobus solfataricus
           gi|13813621|gb|AAK40789.1| Integral membrane protein,
           putative [Sulfolobus solfataricus]
          Length = 837

 Score = 34.3 bits (77), Expect = 1.1
 Identities = 18/49 (36%), Positives = 29/49 (58%)
 Frame = -1

Query: 539 MMISQLSLPLRPHLTLN*LSLVLHLTVPAVFNFDYHLCPILLGCVVFGL 393
           M++  + LPLR  LT+   SL+   TV  V+N  Y L P+++  ++F L
Sbjct: 684 MILGSILLPLRLSLTVGLSSLLGAFTVALVYNSPYWLSPLVIFALLFSL 732

>gb|AAA31881.1| A 'c' was inserted after nt 369 (=nt 10459 in genomic sequence
           (M10126)) to correct -1 frameshift probably due to gel
           compression
          Length = 355

 Score = 33.1 bits (74), Expect = 2.4
 Identities = 17/45 (37%), Positives = 23/45 (50%)
 Frame = -1

Query: 443 FDYHLCPILLGCVVFGLNEKSYVLVINFINFLAAFYLFCLTCLIL 309
           F Y LC I +  + F  +  SY  +IN  N +   YLFCL   I+
Sbjct: 119 FTYLLCFIFIDFISFSNHLISYFGIINMFNVIFCSYLFCLFYFII 163

>pir||C30010 hypothetical ORF-6 protein - Leishmania tarentolae mitochondrion
          Length = 245

 Score = 33.1 bits (74), Expect = 2.4
 Identities = 17/45 (37%), Positives = 23/45 (50%)
 Frame = -1

Query: 443 FDYHLCPILLGCVVFGLNEKSYVLVINFINFLAAFYLFCLTCLIL 309
           F Y LC I +  + F  +  SY  +IN  N +   YLFCL   I+
Sbjct: 9   FTYLLCFIFIDFISFSNHLISYFGIINMFNVIFCSYLFCLFYFII 53

>gb|EAA06872.1| agCP7398 [Anopheles gambiae str. PEST]
          Length = 641

 Score = 32.3 bits (72), Expect = 4.2
 Identities = 18/65 (27%), Positives = 37/65 (56%)
 Frame = +3

Query: 99  SYKPSLQLSRRVNFISSFRSPSFIRASTKAAIKSPFFRDNHQACNKMTRDLVDLSVSEQS 278
           SY  S+  S + +   S  SP+ + +S  ++   P ++D H   +  T+DL+ +++S+ S
Sbjct: 49  SYSSSVSSSPQRSASDSPASPTSVSSSVMSSSGGPDYQDEHDLLS--TKDLMAMAISDPS 106

Query: 279 QSNSS 293
            S+S+
Sbjct: 107 DSDST 111

>ref|NP_788834.1| CD97 antigen [Bos taurus] gi|19170724|emb|CAC94754.1| CD97 protein
           [Bos taurus]
          Length = 734

 Score = 31.2 bits (69), Expect = 9.3
 Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 6/42 (14%)
 Frame = -1

Query: 419 LLGCV-VFGL---NEKSYVL--VINFINFLAAFYLFCLTCLI 312
           +LGC  VFGL   N +S+VL  + + +N L  F+LF L CL+
Sbjct: 646 VLGCTWVFGLLLFNPESWVLSYIFSILNCLQGFFLFVLYCLL 687

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 391,849,387
Number of Sequences: 1393205
Number of extensions: 7039317
Number of successful extensions: 14657
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14653
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MFB068e05_f BP038941 1 406 2 SPD060h02_f BP048804 12 444 3 SPD096c12_f BP051665 30 566

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