Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018527A_C01 KMC018527A_c01
(551 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL67496.1|AF459411_1 senescence-associated putative protein ... 45 1e-10
gb|AAO60017.1| hypothetical protein [Oryza sativa (japonica cult... 53 3e-09
ref|NP_566492.1| expressed protein; protein id: At3g14750.1, sup... 39 1e-05
dbj|BAB02406.1| gb|AAD10662.1~gene_id:MIE1.26~similar to unknown... 39 0.003
pir||T00586 hypothetical protein At2g30120 [imported] - Arabidop... 40 0.014
>gb|AAL67496.1|AF459411_1 senescence-associated putative protein [Narcissus pseudonarcissus]
Length = 128
Score = 45.1 bits (105), Expect(2) = 1e-10
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = -3
Query: 549 HASNLRHKRAMDNKIIIMTCEVEKLRAELADAEKRARAAIAVAA 418
+A N + M+ ++ M EVEKLRAE+A+AEKRARAA A +
Sbjct: 14 YAENYEQGQVMEKNLVSMAREVEKLRAEVANAEKRARAAAAAGS 57
Score = 42.4 bits (98), Expect(2) = 1e-10
Identities = 26/64 (40%), Positives = 29/64 (44%), Gaps = 8/64 (12%)
Frame = -2
Query: 382 YPANYDNPEMGYGGITYPPGSYGMHQIQAG--VDAHPQYAYGA------TLHHPYDLQHT 227
Y NY NP+ YGG YP SY + G D PQYA GA YD+QHT
Sbjct: 65 YGMNYANPDPNYGGNPYPAASYTTNAQVPGNAADGGPQYAAGAGSAAGHASWGSYDMQHT 124
Query: 226 QGPR 215
R
Sbjct: 125 HARR 128
>gb|AAO60017.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 345
Score = 53.1 bits (126), Expect(2) = 3e-09
Identities = 25/48 (52%), Positives = 32/48 (66%)
Frame = -3
Query: 549 HASNLRHKRAMDNKIIIMTCEVEKLRAELADAEKRARAAIAVAAAANP 406
HA NL +AM+ +I + E+EKLR +LA+AEKRA A A A ANP
Sbjct: 206 HADNLEQSKAMEKNMIAVASEIEKLRGDLANAEKRATAVTATAPVANP 253
Score = 29.6 bits (65), Expect(2) = 3e-09
Identities = 15/56 (26%), Positives = 21/56 (36%)
Frame = -2
Query: 382 YPANYDNPEMGYGGITYPPGSYGMHQIQAGVDAHPQYAYGATLHHPYDLQHTQGPR 215
Y + Y + E Y +Y +Q D +P Y + YD QHT R
Sbjct: 290 YASTYGSSEAAYAAAYGNSDAYSTNQAHTRTDGNPHYMAPPVHYAQYDSQHTNVQR 345
>ref|NP_566492.1| expressed protein; protein id: At3g14750.1, supported by cDNA:
gi_14334819, supported by cDNA: gi_15293200 [Arabidopsis
thaliana] gi|14334820|gb|AAK59588.1| unknown protein
[Arabidopsis thaliana] gi|15293201|gb|AAK93711.1|
unknown protein [Arabidopsis thaliana]
Length = 331
Score = 38.5 bits (88), Expect(2) = 1e-05
Identities = 17/38 (44%), Positives = 27/38 (70%)
Frame = -3
Query: 549 HASNLRHKRAMDNKIIIMTCEVEKLRAELADAEKRARA 436
+A N H + M++K++ M E+EKLRAE+A++E A A
Sbjct: 217 YAENYEHGKIMEHKLVAMARELEKLRAEIANSETSAYA 254
Score = 32.0 bits (71), Expect(2) = 1e-05
Identities = 22/58 (37%), Positives = 25/58 (42%), Gaps = 2/58 (3%)
Frame = -2
Query: 391 GPGYPANYDNPEMGYGGITYPPGSYGMHQIQAGVDAH--PQYAYGATLHHPYDLQHTQ 224
G Y Y NPE GY Y P +Y M+ Q GV + P Y A YD Q Q
Sbjct: 263 GVAYGGGYGNPEAGYPVNPYQP-NYTMNPAQTGVVGYYPPPYGPQAAWAGGYDPQQQQ 319
>dbj|BAB02406.1| gb|AAD10662.1~gene_id:MIE1.26~similar to unknown protein
[Arabidopsis thaliana]
Length = 349
Score = 38.5 bits (88), Expect(2) = 0.003
Identities = 17/38 (44%), Positives = 27/38 (70%)
Frame = -3
Query: 549 HASNLRHKRAMDNKIIIMTCEVEKLRAELADAEKRARA 436
+A N H + M++K++ M E+EKLRAE+A++E A A
Sbjct: 217 YAENYEHGKIMEHKLVAMARELEKLRAEIANSETSAYA 254
Score = 23.5 bits (49), Expect(2) = 0.003
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -2
Query: 391 GPGYPANYDNPEMGYGGITYPP 326
G Y Y NPE GY Y P
Sbjct: 263 GVAYGGGYGNPEAGYPVNPYQP 284
>pir||T00586 hypothetical protein At2g30120 [imported] - Arabidopsis thaliana
Length = 248
Score = 40.4 bits (93), Expect = 0.014
Identities = 22/45 (48%), Positives = 27/45 (59%)
Frame = -3
Query: 546 ASNLRHKRAMDNKIIIMTCEVEKLRAELADAEKRARAAIAVAAAA 412
ASNL H+R M+ I + E+ KL EL D E +AR A A A AA
Sbjct: 187 ASNLHHERGMEKTIDHLNREIVKLEEELVDLETKAREANAAAEAA 231
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,648,195
Number of Sequences: 1393205
Number of extensions: 10723038
Number of successful extensions: 33498
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 30928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33368
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
