Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018496A_C01 KMC018496A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T05726 GH1 protein - soybean (fragment) gi|2388689|gb|AAB70... 182 2e-45
emb|CAC84706.1| aux/IAA protein [Populus tremula x Populus tremu... 145 4e-34
gb|AAM12952.1| auxin-regulated protein [Zinnia elegans] 139 3e-32
gb|AAM29182.1| Aux/IAA protein [Solanum tuberosum] 138 4e-32
dbj|BAB10673.1| auxin-induced protein IAA9 [Arabidopsis thaliana] 133 2e-30
>pir||T05726 GH1 protein - soybean (fragment) gi|2388689|gb|AAB70005.1| GH1
protein [Glycine max]
Length = 339
Score = 182 bits (463), Expect = 2e-45
Identities = 99/123 (80%), Positives = 106/123 (85%), Gaps = 6/123 (4%)
Frame = +1
Query: 205 VATASSQ-VDCFE-----LKERNYLGLSDCSSVDSCASTVPSLCDEKKGNLNLKATELRL 366
VA+ SSQ +D F LKERNYLGLSDCSSVDS ASTVPSLCDEKK N+NLKATELRL
Sbjct: 1 VASGSSQSLDRFSQNGAGLKERNYLGLSDCSSVDSSASTVPSLCDEKKENMNLKATELRL 60
Query: 367 GLPGSQSPERDPELFSLSSAATKLDEKPLFPLLPTKDGISSTSQKAVVSGNKRGFADTMD 546
GLPGSQSPER+P+LFSLS A KLDEKPLFPLLPTKDGI ++QK VVSGNKRGFADTMD
Sbjct: 61 GLPGSQSPEREPDLFSLSPA--KLDEKPLFPLLPTKDGICLSAQKTVVSGNKRGFADTMD 118
Query: 547 GFS 555
GFS
Sbjct: 119 GFS 121
>emb|CAC84706.1| aux/IAA protein [Populus tremula x Populus tremuloides]
Length = 365
Score = 145 bits (365), Expect = 4e-34
Identities = 88/140 (62%), Positives = 103/140 (72%), Gaps = 2/140 (1%)
Frame = +1
Query: 142 MTPPAV-VTEEEGRCKLTSTTTVATASSQ-VDCFELKERNYLGLSDCSSVDSCASTVPSL 315
M+PP + V EEEG+ +T + A+A S ++ ELKERNY+GLSDCSSVDS S V +
Sbjct: 1 MSPPLLGVVEEEGQSNVTLLASPASAESACLNGLELKERNYMGLSDCSSVDS--SAVSAA 58
Query: 316 CDEKKGNLNLKATELRLGLPGSQSPERDPELFSLSSAATKLDEKPLFPLLPTKDGISSTS 495
DE+K +LNLKATELRLGLPGSQSPER+ EL LSSA LDEKP FPL P+ DG ST
Sbjct: 59 SDERKASLNLKATELRLGLPGSQSPERNHELSLLSSAL--LDEKPFFPLHPSNDGHYST- 115
Query: 496 QKAVVSGNKRGFADTMDGFS 555
QK VVSGNKR F+D MD FS
Sbjct: 116 QKNVVSGNKRVFSDAMDEFS 135
>gb|AAM12952.1| auxin-regulated protein [Zinnia elegans]
Length = 351
Score = 139 bits (349), Expect = 3e-32
Identities = 79/136 (58%), Positives = 96/136 (70%), Gaps = 1/136 (0%)
Frame = +1
Query: 142 MTPPAVVTEEEGRCKLTSTTTVATASSQVDC-FELKERNYLGLSDCSSVDSCASTVPSLC 318
M PP + E +G ++ T+ +T S EL ERNYLGLSDCSS DS A V +
Sbjct: 1 MPPPLLGVEGDGLGNVSLMTSASTMESIFQKNAELTERNYLGLSDCSSFDSTA--VSGIS 58
Query: 319 DEKKGNLNLKATELRLGLPGSQSPERDPELFSLSSAATKLDEKPLFPLLPTKDGISSTSQ 498
+ K+ NLNLKATELRLGLPGSQSPERD ++ ++S + LDEKPLFPLLP+KDGI S SQ
Sbjct: 59 EVKRNNLNLKATELRLGLPGSQSPERDVDVDLVNSES--LDEKPLFPLLPSKDGICSNSQ 116
Query: 499 KAVVSGNKRGFADTMD 546
K VSGNKRGF+D +D
Sbjct: 117 KVFVSGNKRGFSDAID 132
>gb|AAM29182.1| Aux/IAA protein [Solanum tuberosum]
Length = 349
Score = 138 bits (348), Expect = 4e-32
Identities = 84/142 (59%), Positives = 99/142 (69%), Gaps = 4/142 (2%)
Frame = +1
Query: 142 MTPPAV-VTEEEGRCKLT---STTTVATASSQVDCFELKERNYLGLSDCSSVDSCASTVP 309
M+PP + V EEEG+ +T S+T++ + + LKERNY+GLSDCSSVDSC +
Sbjct: 1 MSPPLLGVGEEEGQSNVTLLASSTSLGSICKKGSA--LKERNYMGLSDCSSVDSCNISTS 58
Query: 310 SLCDEKKGNLNLKATELRLGLPGSQSPERDPELFSLSSAATKLDEKPLFPLLPTKDGISS 489
S D LNLKATELRLGLPGSQSPER E +SS TK+DEK LFPL P KD S
Sbjct: 59 SE-DNNGCGLNLKATELRLGLPGSQSPERGEETCPVSS--TKVDEKLLFPLHPAKDTAFS 115
Query: 490 TSQKAVVSGNKRGFADTMDGFS 555
SQK VV+GNKRGF+DTMDGFS
Sbjct: 116 VSQKTVVTGNKRGFSDTMDGFS 137
>dbj|BAB10673.1| auxin-induced protein IAA9 [Arabidopsis thaliana]
Length = 333
Score = 133 bits (334), Expect = 2e-30
Identities = 77/130 (59%), Positives = 91/130 (69%), Gaps = 6/130 (4%)
Frame = +1
Query: 184 KLTSTTTVATASSQVDCFE------LKERNYLGLSDCSSVDSCASTVPSLCDEKKGNLNL 345
+L S +VA++S +C LKE NYLGLSDCSSV S ST+ L ++ K ++L
Sbjct: 6 ELQSNVSVASSSPTSNCISRNTLGGLKEHNYLGLSDCSSVGS--STLSPLAEDDKATISL 63
Query: 346 KATELRLGLPGSQSPERDPELFSLSSAATKLDEKPLFPLLPTKDGISSTSQKAVVSGNKR 525
KATEL LGLPGSQSP RD EL LS A KLDEKP FPLLP+KD I S+SQK SGNKR
Sbjct: 64 KATELTLGLPGSQSPARDTELNLLSPA--KLDEKPFFPLLPSKDEICSSSQKNNASGNKR 121
Query: 526 GFADTMDGFS 555
GF+DTMD F+
Sbjct: 122 GFSDTMDQFA 131
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.315 0.130 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,360,343
Number of Sequences: 1393205
Number of extensions: 10436171
Number of successful extensions: 52179
Number of sequences better than 10.0: 156
Number of HSP's better than 10.0 without gapping: 45706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51306
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
