Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018491A_C01 KMC018491A_c01
(580 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_700518.1| hypothetical protein [Plasmodium falciparum 3D7... 35 0.67
ref|NP_178005.1| hypothetical protein; protein id: At1g78840.1 [... 35 0.88
ref|XP_209484.1| similar to cysteine string protein [Homo sapien... 27 3.3
gb|AAH35194.1| Similar to DnaJ (Hsp40) homolog, subfamily C, mem... 27 3.3
gb|AAK60572.1|AF368277_1 gamma cysteine string protein [Homo sap... 27 4.0
>ref|NP_700518.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23494907|gb|AAN35242.1|AE014829_42 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1190
Score = 35.0 bits (79), Expect = 0.67
Identities = 36/145 (24%), Positives = 60/145 (40%), Gaps = 5/145 (3%)
Frame = +1
Query: 115 SKLYTFS--CN*HNNT*HNHKSI-TTLNYITTEATAIK--CSPSAFYHVVHESI*DAKNM 279
SKL S CN +N N+ SI T Y + IK S YH+ +E K
Sbjct: 63 SKLLNLSVTCNFNNYAQANYISIWDTYQYKEQDHIEIKNIFSYDCAYHIFNEC---EKKR 119
Query: 280 NTDTKSEAGAFKVSVKF*QLLLYFSVIHKETVQTSTLWML*NLQKPLTSQNSILHNLEHF 459
N E + + + F + L ++ + + +LW L N KP + H
Sbjct: 120 NIQQNEEKHNYILDICFVEELKCLLILTDDPYTSMSLWSLTNTTKP--------YLCIHT 171
Query: 460 GNESICSLTFPMSISEYRNQKAVHI 534
+ +L+ + + Y+N+K++HI
Sbjct: 172 NKNQLTNLSILFNYNNYKNKKSLHI 196
>ref|NP_178005.1| hypothetical protein; protein id: At1g78840.1 [Arabidopsis
thaliana] gi|25406574|pir||G96817 hypothetical protein
F9K20.11 [imported] - Arabidopsis thaliana
gi|3834311|gb|AAC83027.1| Contains similarity to
gi|2244754 heat shock transcription factor homolog HSF30
from A. thaliana chromosome 4 contig gb|Z97335.
[Arabidopsis thaliana]
Length = 439
Score = 34.7 bits (78), Expect = 0.88
Identities = 16/48 (33%), Positives = 27/48 (55%)
Frame = -3
Query: 578 VKFVLANAAILERVTICTAFWLRYSDIDMGKVKEQILSLPKCSRLCKI 435
VK++L NAA+++ +T+ W + K QIL+ PK S C++
Sbjct: 388 VKYILGNAAVVKELTLRFILWAEEHRFQLSK---QILAFPKLSSACQV 432
>ref|XP_209484.1| similar to cysteine string protein [Homo sapiens]
gi|27735107|ref|NP_775921.1| hypothetical protein
FLJ40417 [Homo sapiens] gi|21757598|dbj|BAC05155.1|
unnamed protein product [Homo sapiens]
Length = 189
Score = 26.6 bits (57), Expect(2) = 3.3
Identities = 13/31 (41%), Positives = 17/31 (53%), Gaps = 2/31 (6%)
Frame = -2
Query: 282 VHIFSILNT--FMNYMVKCRWGTFDCCCFCC 196
V + ILN+ F ++ C T CCCFCC
Sbjct: 113 VRYYFILNSCWFKTLVILCTLLT--CCCFCC 141
Score = 25.0 bits (53), Expect(2) = 3.3
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = -2
Query: 213 CCCFCCDVIQ 184
CCCFCC ++
Sbjct: 142 CCCFCCGALK 151
>gb|AAH35194.1| Similar to DnaJ (Hsp40) homolog, subfamily C, member 5 [Homo
sapiens]
Length = 174
Score = 26.6 bits (57), Expect(2) = 3.3
Identities = 13/31 (41%), Positives = 17/31 (53%), Gaps = 2/31 (6%)
Frame = -2
Query: 282 VHIFSILNT--FMNYMVKCRWGTFDCCCFCC 196
V + ILN+ F ++ C T CCCFCC
Sbjct: 98 VRYYFILNSCWFKTLVILCTLLT--CCCFCC 126
Score = 25.0 bits (53), Expect(2) = 3.3
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = -2
Query: 213 CCCFCCDVIQ 184
CCCFCC ++
Sbjct: 127 CCCFCCGALK 136
>gb|AAK60572.1|AF368277_1 gamma cysteine string protein [Homo sapiens]
Length = 109
Score = 26.6 bits (57), Expect(2) = 4.0
Identities = 13/31 (41%), Positives = 17/31 (53%), Gaps = 2/31 (6%)
Frame = -2
Query: 282 VHIFSILNT--FMNYMVKCRWGTFDCCCFCC 196
V + ILN+ F ++ C T CCCFCC
Sbjct: 57 VRYYFILNSCWFKTLVILCTLLT--CCCFCC 85
Score = 25.0 bits (53), Expect(2) = 4.0
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = -2
Query: 213 CCCFCCDVIQ 184
CCCFCC ++
Sbjct: 86 CCCFCCGALK 95
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,454,709
Number of Sequences: 1393205
Number of extensions: 9329328
Number of successful extensions: 18033
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18004
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
