Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018466A_C01 KMC018466A_c01
(470 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM64933.1| photolyase/blue-light receptor PHR2 [Arabidopsis ... 95 4e-19
ref|NP_182281.1| photolyase/blue-light receptor (PHR2); protein ... 95 4e-19
pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis ... 59 2e-08
ref|NP_441086.1| DNA photolyase [Synechocystis sp. PCC 6803] gi|... 59 2e-08
ref|ZP_00117704.1| hypothetical protein [Cytophaga hutchinsonii] 55 4e-07
>gb|AAM64933.1| photolyase/blue-light receptor PHR2 [Arabidopsis thaliana]
Length = 447
Score = 94.7 bits (234), Expect = 4e-19
Identities = 47/76 (61%), Positives = 54/76 (70%)
Frame = -3
Query: 468 GCLSPRTIFDELKKTPRRAISASSNGKAGGGGSSHTGTHWLMFELLWRDFFRFITPKYRS 289
G +SPR++FDELKKT ISAS+ G TG +WLM+ELLWRDFFRFIT KY S
Sbjct: 374 GSISPRSMFDELKKT----ISASTTSTTPRNGPGDTGLNWLMYELLWRDFFRFITKKYSS 429
Query: 288 AKKPLEAAPVTACTGA 241
AK +EA P TACTGA
Sbjct: 430 AKTQVEAGPATACTGA 445
>ref|NP_182281.1| photolyase/blue-light receptor (PHR2); protein id: At2g47590.1,
supported by cDNA: 34800., supported by cDNA: gi_3319287
[Arabidopsis thaliana] gi|7484906|pir||T00425
photolyase/blue-light receptor (PHR2) [imported] -
Arabidopsis thaliana gi|2529668|gb|AAC62851.1|
photolyase/blue-light receptor (PHR2) [Arabidopsis
thaliana] gi|3319288|gb|AAC26199.1| photolyase/blue
light photoreceptor PHR2 [Arabidopsis thaliana]
Length = 447
Score = 94.7 bits (234), Expect = 4e-19
Identities = 47/76 (61%), Positives = 54/76 (70%)
Frame = -3
Query: 468 GCLSPRTIFDELKKTPRRAISASSNGKAGGGGSSHTGTHWLMFELLWRDFFRFITPKYRS 289
G +SPR++FDELKKT ISAS+ G TG +WLM+ELLWRDFFRFIT KY S
Sbjct: 374 GSISPRSMFDELKKT----ISASTTSTTPRNGPGDTGLNWLMYELLWRDFFRFITKKYSS 429
Query: 288 AKKPLEAAPVTACTGA 241
AK +EA P TACTGA
Sbjct: 430 AKTQVEAGPATACTGA 445
>pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome gi|28374086|pdb|1NP7|B Chain B, Crystal
Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
Length = 489
Score = 59.3 bits (142), Expect = 2e-08
Identities = 28/58 (48%), Positives = 35/58 (60%)
Frame = -3
Query: 468 GCLSPRTIFDELKKTPRRAISASSNGKAGGGGSSHTGTHWLMFELLWRDFFRFITPKY 295
GCLSPR I+ E+K+ + +S S THWL+FELLWRDFFRF+ KY
Sbjct: 259 GCLSPRFIYQEVKRYEQERVSNDS-------------THWLIFELLWRDFFRFVAQKY 303
>ref|NP_441086.1| DNA photolyase [Synechocystis sp. PCC 6803] gi|7436794|pir||S74805
DNA photolyase - Synechocystis sp. (strain PCC 6803)
gi|1652848|dbj|BAA17766.1| DNA photolyase [Synechocystis
sp. PCC 6803]
Length = 453
Score = 59.3 bits (142), Expect = 2e-08
Identities = 28/58 (48%), Positives = 35/58 (60%)
Frame = -3
Query: 468 GCLSPRTIFDELKKTPRRAISASSNGKAGGGGSSHTGTHWLMFELLWRDFFRFITPKY 295
GCLSPR I+ E+K+ + +S S THWL+FELLWRDFFRF+ KY
Sbjct: 223 GCLSPRFIYQEVKRYEQERVSNDS-------------THWLIFELLWRDFFRFVAQKY 267
>ref|ZP_00117704.1| hypothetical protein [Cytophaga hutchinsonii]
Length = 434
Score = 55.1 bits (131), Expect = 4e-07
Identities = 27/59 (45%), Positives = 36/59 (60%)
Frame = -3
Query: 468 GCLSPRTIFDELKKTPRRAISASSNGKAGGGGSSHTGTHWLMFELLWRDFFRFITPKYR 292
GCLSPR I+ ELKK R S++ T+WL+FELLWRD+FRF+ K++
Sbjct: 254 GCLSPREIYTELKKYESRF-------------SANESTYWLIFELLWRDYFRFMMKKHK 299
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 522,293,800
Number of Sequences: 1393205
Number of extensions: 13092688
Number of successful extensions: 42299
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42146
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
