Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018457A_C01 KMC018457A_c01
(652 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T07107 probable calcium-binding protein (clone Y8) - potato... 107 1e-22
ref|NP_195592.1| EF-Hand containing protein -like; protein id: A... 91 1e-17
gb|AAL77132.1|AC098566_19 Putative calcium-binding protein [Oryz... 91 1e-17
gb|AAM20613.1| EF-Hand containing protein-like [Arabidopsis thal... 91 1e-17
ref|NP_621910.1| Beta-lactamase class C and other penicillin bin... 33 4.4
>pir||T07107 probable calcium-binding protein (clone Y8) - potato
gi|3550661|emb|CAA04670.1| 39 kDa EF-Hand containing
protein [Solanum tuberosum]
Length = 355
Score = 107 bits (267), Expect = 1e-22
Identities = 52/69 (75%), Positives = 62/69 (89%)
Frame = -1
Query: 652 EMDKVISEACKMVNADDTKTVKEDEFKKVLTEILGSIMLQLGGNPISVNSNSVVHEPLGS 473
+MDKVI E CKM++ADD K VKE+EFKK+LTEILGS+MLQL GNP+SV++NSVVHEPL S
Sbjct: 283 QMDKVIQEVCKMLDADDGKMVKEEEFKKLLTEILGSMMLQLEGNPVSVSTNSVVHEPLAS 342
Query: 472 SSSLLQPSS 446
SS+LLQP S
Sbjct: 343 SSTLLQPPS 351
>ref|NP_195592.1| EF-Hand containing protein -like; protein id: At4g38810.1,
supported by cDNA: gi_15810420 [Arabidopsis thaliana]
gi|7488068|pir||T06080 probable calcium-binding protein
T9A14.90 - Arabidopsis thaliana
gi|4490333|emb|CAB38615.1| EF-Hand containing
protein-like [Arabidopsis thaliana]
gi|7270864|emb|CAB80544.1| EF-Hand containing
protein-like [Arabidopsis thaliana]
gi|15810421|gb|AAL07098.1| putative EF-hand containing
protein [Arabidopsis thaliana]
Length = 375
Score = 90.9 bits (224), Expect = 1e-17
Identities = 46/71 (64%), Positives = 56/71 (78%)
Frame = -1
Query: 652 EMDKVISEACKMVNADDTKTVKEDEFKKVLTEILGSIMLQLGGNPISVNSNSVVHEPLGS 473
+MD +I EA KMVN DD VKE+EFKK + EILGSIMLQL G+PISV+SNSVVHEPL S
Sbjct: 300 QMDNMIMEALKMVNGDDGNVVKEEEFKKTMAEILGSIMLQLEGSPISVSSNSVVHEPLTS 359
Query: 472 SSSLLQPSSET 440
++ L S++T
Sbjct: 360 ATFLPSTSTDT 370
>gb|AAL77132.1|AC098566_19 Putative calcium-binding protein [Oryza sativa]
Length = 417
Score = 90.9 bits (224), Expect = 1e-17
Identities = 43/68 (63%), Positives = 56/68 (82%)
Frame = -1
Query: 652 EMDKVISEACKMVNADDTKTVKEDEFKKVLTEILGSIMLQLGGNPISVNSNSVVHEPLGS 473
++D V+ EA KM A+D K V E EFKK+LTEILG++MLQL GNPISV++NSV+HEP+ +
Sbjct: 339 QVDAVVDEAFKMAKAEDGKAVDETEFKKLLTEILGAVMLQLDGNPISVSTNSVLHEPMST 398
Query: 472 SSSLLQPS 449
SS+LL PS
Sbjct: 399 SSTLLSPS 406
>gb|AAM20613.1| EF-Hand containing protein-like [Arabidopsis thaliana]
gi|22136428|gb|AAM91292.1| EF-hand containing
protein-like [Arabidopsis thaliana]
Length = 265
Score = 90.9 bits (224), Expect = 1e-17
Identities = 46/71 (64%), Positives = 56/71 (78%)
Frame = -1
Query: 652 EMDKVISEACKMVNADDTKTVKEDEFKKVLTEILGSIMLQLGGNPISVNSNSVVHEPLGS 473
+MD +I EA KMVN DD VKE+EFKK + EILGSIMLQL G+PISV+SNSVVHEPL S
Sbjct: 190 QMDNMIMEALKMVNGDDGNVVKEEEFKKTMAEILGSIMLQLEGSPISVSSNSVVHEPLTS 249
Query: 472 SSSLLQPSSET 440
++ L S++T
Sbjct: 250 ATFLPSTSTDT 260
>ref|NP_621910.1| Beta-lactamase class C and other penicillin binding proteins
[Thermoanaerobacter tengcongensis]
gi|20515196|gb|AAM23514.1| Beta-lactamase class C and
other penicillin binding proteins [Thermoanaerobacter
tengcongensis]
Length = 355
Score = 32.7 bits (73), Expect = 4.4
Identities = 19/62 (30%), Positives = 30/62 (47%)
Frame = -1
Query: 637 ISEACKMVNADDTKTVKEDEFKKVLTEILGSIMLQLGGNPISVNSNSVVHEPLGSSSSLL 458
I+ C+ V + K V+ + +L LG I+ LGGN + + V EPLG ++
Sbjct: 135 INYICEEVKLNPNKNVEYSDLNFIL---LGRILEILGGNRLDTLCHKEVFEPLGMKDTMF 191
Query: 457 QP 452
P
Sbjct: 192 NP 193
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 534,333,222
Number of Sequences: 1393205
Number of extensions: 11033864
Number of successful extensions: 25673
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 24684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25662
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27860523586
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
