Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018441A_C01 KMC018441A_c01
(544 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200235.1| putative protein; protein id: At5g54240.1 [Arab... 174 6e-43
ref|NP_194465.1| putative protein; protein id: At4g27350.1, supp... 168 3e-41
gb|AAG40031.2|AF324680_1 AT4g27350 [Arabidopsis thaliana] 167 1e-40
gb|AAM65012.1| unknown [Arabidopsis thaliana] 166 2e-40
gb|AAO42244.1| unknown protein [Arabidopsis thaliana] 119 2e-26
>ref|NP_200235.1| putative protein; protein id: At5g54240.1 [Arabidopsis thaliana]
gi|9759497|dbj|BAB10747.1|
gene_id:MDK4.6~pir||T05759~strong similarity to unknown
protein [Arabidopsis thaliana]
Length = 282
Score = 174 bits (441), Expect = 6e-43
Identities = 84/111 (75%), Positives = 97/111 (86%)
Frame = -2
Query: 540 DSLQVSLTGALKTKVDSNGANVMVALYESGLVTDCPRGENXGRVLSNDYVVRKLEKLCNV 361
++LQVSLTGAL+ KVDS+G ++MVALYE+GLV DC RGEN GRVLSNDYVVRKLEKLC V
Sbjct: 172 ETLQVSLTGALRMKVDSSGIDIMVALYENGLVNDCARGENSGRVLSNDYVVRKLEKLCTV 231
Query: 360 KDISAKKTVLGTIDFPLWKGFNSSKCGVAVFLQNSSHQIFGSQSFHLPDDI 208
KD++ KKTV GT F +W GFNSSKCGVAVFLQN+S QIFG+QSF LPD+I
Sbjct: 232 KDLTGKKTVSGTAHFTVWDGFNSSKCGVAVFLQNTSLQIFGTQSFQLPDEI 282
>ref|NP_194465.1| putative protein; protein id: At4g27350.1, supported by cDNA:
35749., supported by cDNA: gi_12597468, supported by
cDNA: gi_13265462, supported by cDNA: gi_21281146
[Arabidopsis thaliana] gi|7460217|pir||T05759
hypothetical protein M4I22.160 - Arabidopsis thaliana
gi|3269296|emb|CAA19729.1| putative protein [Arabidopsis
thaliana] gi|7269588|emb|CAB79590.1| putative protein
[Arabidopsis thaliana]
gi|12597469|gb|AAG60063.1|AF337911_1 unknown protein
[Arabidopsis thaliana] gi|21281147|gb|AAM44923.1|
membrane lipoprotein lipid attachment site-containing
unknown protein [Arabidopsis thaliana]
Length = 278
Score = 168 bits (426), Expect = 3e-41
Identities = 80/111 (72%), Positives = 95/111 (85%)
Frame = -2
Query: 540 DSLQVSLTGALKTKVDSNGANVMVALYESGLVTDCPRGENXGRVLSNDYVVRKLEKLCNV 361
++LQVSLTGAL+ KVD +G ++MVA+YE+GLV DC RGEN GR+LSNDYVVRK+EK+C V
Sbjct: 168 ETLQVSLTGALRMKVDGDGMDIMVAIYETGLVNDCARGENEGRMLSNDYVVRKMEKMCTV 227
Query: 360 KDISAKKTVLGTIDFPLWKGFNSSKCGVAVFLQNSSHQIFGSQSFHLPDDI 208
KD++ KK V GT F LW GFNSSKCGVAVFLQNSS QIFG+QSF LPD+I
Sbjct: 228 KDVAPKKPVSGTAHFTLWDGFNSSKCGVAVFLQNSSLQIFGTQSFKLPDEI 278
>gb|AAG40031.2|AF324680_1 AT4g27350 [Arabidopsis thaliana]
Length = 278
Score = 167 bits (422), Expect = 1e-40
Identities = 79/111 (71%), Positives = 94/111 (84%)
Frame = -2
Query: 540 DSLQVSLTGALKTKVDSNGANVMVALYESGLVTDCPRGENXGRVLSNDYVVRKLEKLCNV 361
++LQVSLTGAL+ KVD +G ++MVA+YE+GLV DC RGEN GR+LSNDYVVRK+EK+C V
Sbjct: 168 ETLQVSLTGALRMKVDGDGMDIMVAIYETGLVNDCARGENEGRMLSNDYVVRKMEKMCTV 227
Query: 360 KDISAKKTVLGTIDFPLWKGFNSSKCGVAVFLQNSSHQIFGSQSFHLPDDI 208
KD++ KK V GT F LW GFNSSKCGVAVF QNSS QIFG+QSF LPD+I
Sbjct: 228 KDVAPKKPVSGTAHFTLWDGFNSSKCGVAVFFQNSSLQIFGTQSFKLPDEI 278
>gb|AAM65012.1| unknown [Arabidopsis thaliana]
Length = 278
Score = 166 bits (419), Expect = 2e-40
Identities = 79/111 (71%), Positives = 94/111 (84%)
Frame = -2
Query: 540 DSLQVSLTGALKTKVDSNGANVMVALYESGLVTDCPRGENXGRVLSNDYVVRKLEKLCNV 361
++LQVSLTGAL+ KVD +G ++MVA+YE+GLV DC RGEN GR+LSNDYVVRK+EK+C V
Sbjct: 168 ETLQVSLTGALRMKVDGDGMDIMVAIYETGLVNDCARGENEGRMLSNDYVVRKMEKMCTV 227
Query: 360 KDISAKKTVLGTIDFPLWKGFNSSKCGVAVFLQNSSHQIFGSQSFHLPDDI 208
KD++ KK V GT F LW GFNSSKCGVAVFLQNSS QI G+QSF LPD+I
Sbjct: 228 KDVAPKKPVSGTAHFTLWDGFNSSKCGVAVFLQNSSLQIXGTQSFKLPDEI 278
>gb|AAO42244.1| unknown protein [Arabidopsis thaliana]
Length = 73
Score = 119 bits (299), Expect = 2e-26
Identities = 57/73 (78%), Positives = 63/73 (86%)
Frame = -2
Query: 426 ENXGRVLSNDYVVRKLEKLCNVKDISAKKTVLGTIDFPLWKGFNSSKCGVAVFLQNSSHQ 247
EN GRVLSNDYVVRKLEKLC VKD++ KKTV GT F +W GFNSSKCGVAVFLQN+S Q
Sbjct: 1 ENSGRVLSNDYVVRKLEKLCTVKDLTGKKTVSGTAHFTVWDGFNSSKCGVAVFLQNTSLQ 60
Query: 246 IFGSQSFHLPDDI 208
IFG+QSF LPD+I
Sbjct: 61 IFGTQSFQLPDEI 73
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 443,062,557
Number of Sequences: 1393205
Number of extensions: 8742566
Number of successful extensions: 21860
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 21213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21858
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
