Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018418A_C01 KMC018418A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF98554.1|AF153441_1 serine threonine kinase homolog COK-4 [... 65 4e-10
dbj|BAA87852.1| unnamed protein product [Oryza sativa (japonica ... 44 0.001
dbj|BAB56062.1| putative receptor-protein kinase [Oryza sativa (... 42 0.004
gb|AAM10331.1| AT5g38990/K15E6_170 [Arabidopsis thaliana] gi|233... 41 0.009
ref|NP_198715.1| protein kinase - like protein; protein id: At5g... 41 0.009
>gb|AAF98554.1|AF153441_1 serine threonine kinase homolog COK-4 [Phaseolus vulgaris]
Length = 369
Score = 65.5 bits (158), Expect = 4e-10
Identities = 29/56 (51%), Positives = 42/56 (74%), Gaps = 1/56 (1%)
Frame = +1
Query: 385 CWHSKHTNS-SSEKHYPTIIEELCHLFSLDELRKSANNFNENRIIGTSFFNIVYRG 549
C TN+ SS++ +PT+IEELCH FSL +LRK+ NNF++ R+IG+ F+ VY+G
Sbjct: 9 CCSKPTTNTTSSQRQFPTLIEELCHQFSLTDLRKATNNFDQKRVIGSGLFSEVYKG 64
>dbj|BAA87852.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|7106536|dbj|BAA92221.1| unnamed protein product
[Oryza sativa (japonica cultivar-group)]
Length = 898
Score = 43.9 bits (102), Expect = 0.001
Identities = 22/60 (36%), Positives = 32/60 (52%)
Frame = +1
Query: 376 YLSCWHSKHTNSSSEKHYPTIIEELCHLFSLDELRKSANNFNENRIIGTSFFNIVYRGSV 555
+L +HS HT+ S H I +C FS E++ + NF+ + IG F +VYRG V
Sbjct: 507 WLPLYHS-HTSGKSSGHITANIAGMCRHFSFAEIKAATKNFSNDLAIGVGGFGVVYRGVV 565
>dbj|BAB56062.1| putative receptor-protein kinase [Oryza sativa (japonica
cultivar-group)] gi|21743317|dbj|BAC03312.1| putative
receptor-protein kinase [Oryza sativa (japonica
cultivar-group)]
Length = 896
Score = 42.4 bits (98), Expect = 0.004
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Frame = +1
Query: 379 LSCWHSKHTNSSSEKHYP-----TIIEELCHLFSLDELRKSANNFNENRIIGTSFFNIVY 543
LS + + H++ S++ H ++ LC FS E++ + NNF+E+ ++G F VY
Sbjct: 499 LSLYGNSHSSGSAKSHTTGSYASSLPSNLCRHFSFAEIKAATNNFDESLLLGVGGFGKVY 558
Query: 544 RGSV 555
RG +
Sbjct: 559 RGEI 562
>gb|AAM10331.1| AT5g38990/K15E6_170 [Arabidopsis thaliana]
gi|23308461|gb|AAN18200.1| At5g38990/K15E6_170
[Arabidopsis thaliana]
Length = 880
Score = 41.2 bits (95), Expect = 0.009
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +1
Query: 403 TNSSSEKHYPTIIEELCHLFSLDELRKSANNFNENRIIGTSFFNIVYRGSV 555
T S++ K ++ +LC FS+ E++ + N+F E IIG F VY+G +
Sbjct: 494 TGSTNTKSASSLPSDLCRRFSIYEIKSATNDFEEKLIIGVGGFGSVYKGRI 544
>ref|NP_198715.1| protein kinase - like protein; protein id: At5g38990.1, supported
by cDNA: gi_20147232 [Arabidopsis thaliana]
Length = 880
Score = 41.2 bits (95), Expect = 0.009
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +1
Query: 403 TNSSSEKHYPTIIEELCHLFSLDELRKSANNFNENRIIGTSFFNIVYRGSV 555
T S++ K ++ +LC FS+ E++ + N+F E IIG F VY+G +
Sbjct: 494 TGSTNTKSASSLPSDLCRRFSIYEIKSATNDFEEKLIIGVGGFGSVYKGRI 544
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 453,062,826
Number of Sequences: 1393205
Number of extensions: 9351775
Number of successful extensions: 23543
Number of sequences better than 10.0: 135
Number of HSP's better than 10.0 without gapping: 22602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23510
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
