Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018410A_C01 KMC018410A_c01
(540 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193006.1| putative protein; protein id: At4g12700.1 [Arab... 192 3e-48
ref|NP_565310.1| expressed protein; protein id: At2g04280.1, sup... 188 3e-47
ref|NP_192621.1| putative protein; protein id: At4g08810.1, supp... 140 8e-33
dbj|BAC07112.1| contains ESTs C73312(E3729),AU094248(E3729)~simi... 137 1e-31
dbj|BAB92267.1| P0034E02.33 [Oryza sativa (japonica cultivar-gro... 88 6e-17
>ref|NP_193006.1| putative protein; protein id: At4g12700.1 [Arabidopsis thaliana]
gi|7487274|pir||T06628 hypothetical protein T20K18.50 -
Arabidopsis thaliana gi|4586246|emb|CAB40987.1| putative
protein [Arabidopsis thaliana]
gi|7267971|emb|CAB78312.1| putative protein [Arabidopsis
thaliana]
Length = 561
Score = 192 bits (487), Expect = 3e-48
Identities = 85/107 (79%), Positives = 99/107 (92%)
Frame = -2
Query: 539 STLRDKVDEGRNLYIATNEPDTSFFDPLKDKYTTHFLDEYKDLWEENSEWYSETTKLNNG 360
STL+DK+++GRNLYIATNEP+ SFF+PLKDKY HFLDE+KDLW+E+SEWYSETTKLN G
Sbjct: 455 STLQDKIEQGRNLYIATNEPELSFFNPLKDKYKPHFLDEFKDLWDESSEWYSETTKLNGG 514
Query: 359 VPVEFDGYMRVSIDTEVFLRGKKQLETFNDLTSDCKDGINTCNAAAN 219
PVEFDGYMR S+DTEVFLRGKKQ+ETFNDLT+DC+DGI TCN AA+
Sbjct: 515 NPVEFDGYMRASVDTEVFLRGKKQIETFNDLTNDCRDGIGTCNVAAS 561
>ref|NP_565310.1| expressed protein; protein id: At2g04280.1, supported by cDNA:
gi_15810336 [Arabidopsis thaliana]
gi|25365943|pir||G84455 hypothetical protein At2g04280
[imported] - Arabidopsis thaliana
gi|4689474|gb|AAD27910.1| expressed protein [Arabidopsis
thaliana] gi|15810337|gb|AAL07056.1| unknown protein
[Arabidopsis thaliana]
Length = 568
Score = 188 bits (478), Expect = 3e-47
Identities = 85/107 (79%), Positives = 98/107 (91%)
Frame = -2
Query: 539 STLRDKVDEGRNLYIATNEPDTSFFDPLKDKYTTHFLDEYKDLWEENSEWYSETTKLNNG 360
STL+DKV+EGR+LYIATNE + SFF+PLKDKY THFL +YKDLW+E+SEWYSETTKLN G
Sbjct: 462 STLQDKVEEGRHLYIATNEGELSFFNPLKDKYATHFLYDYKDLWDESSEWYSETTKLNGG 521
Query: 359 VPVEFDGYMRVSIDTEVFLRGKKQLETFNDLTSDCKDGINTCNAAAN 219
PVEFDGYMR S+DTEVFLRGKKQ+ETFNDLT+DCKDG+ TCNAA +
Sbjct: 522 NPVEFDGYMRASVDTEVFLRGKKQIETFNDLTNDCKDGVGTCNAATS 568
>ref|NP_192621.1| putative protein; protein id: At4g08810.1, supported by cDNA:
gi_15912228 [Arabidopsis thaliana]
gi|25365941|pir||F85088 hypothetical protein AT4g08810
[imported] - Arabidopsis thaliana
gi|7267523|emb|CAB78006.1| putative protein [Arabidopsis
thaliana] gi|7321070|emb|CAB82117.1| putative protein
[Arabidopsis thaliana] gi|15912229|gb|AAL08248.1|
AT4g08810/T32A17_120 [Arabidopsis thaliana]
gi|27363304|gb|AAO11571.1| At4g08810/T32A17_120
[Arabidopsis thaliana]
Length = 552
Score = 140 bits (354), Expect = 8e-33
Identities = 63/100 (63%), Positives = 78/100 (78%)
Frame = -2
Query: 533 LRDKVDEGRNLYIATNEPDTSFFDPLKDKYTTHFLDEYKDLWEENSEWYSETTKLNNGVP 354
L+ V RNLY+ATNEP ++FD L+ +Y H LD+Y LW SEWY+ET+ LNNG P
Sbjct: 453 LKGLVQVWRNLYVATNEPFYNYFDKLRSQYKVHLLDDYSYLWGNKSEWYNETSLLNNGKP 512
Query: 353 VEFDGYMRVSIDTEVFLRGKKQLETFNDLTSDCKDGINTC 234
VEFDGYMRV++DTEVF RGK ++ETF +LT+DCKDGINTC
Sbjct: 513 VEFDGYMRVAVDTEVFYRGKTRVETFYNLTTDCKDGINTC 552
>dbj|BAC07112.1| contains ESTs C73312(E3729),AU094248(E3729)~similar to Arabidopsis
thaliana chromosome 4, At4g08810~unknown protein [Oryza
sativa (japonica cultivar-group)]
gi|22296387|dbj|BAC10156.1| P0519E12.32 [Oryza sativa
(japonica cultivar-group)]
Length = 585
Score = 137 bits (344), Expect = 1e-31
Identities = 61/93 (65%), Positives = 72/93 (76%)
Frame = -2
Query: 509 RNLYIATNEPDTSFFDPLKDKYTTHFLDEYKDLWEENSEWYSETTKLNNGVPVEFDGYMR 330
RNLYIATNEP ++FD L+ + H LD+YK+LW SEWY+ETT L+ G PV FD YMR
Sbjct: 492 RNLYIATNEPFYNYFDKLRSYFHVHLLDDYKELWSNTSEWYNETTTLSGGRPVPFDAYMR 551
Query: 329 VSIDTEVFLRGKKQLETFNDLTSDCKDGINTCN 231
V +DTEVF R K Q+ETFN+LT DCKDGINTCN
Sbjct: 552 VIVDTEVFYRAKTQVETFNNLTRDCKDGINTCN 584
>dbj|BAB92267.1| P0034E02.33 [Oryza sativa (japonica cultivar-group)]
Length = 454
Score = 88.2 bits (217), Expect = 6e-17
Identities = 42/90 (46%), Positives = 62/90 (68%), Gaps = 6/90 (6%)
Frame = -2
Query: 533 LRDKVDE-----GRNLYIATNEPDTSFFDPLKDKYTT-HFLDEYKDLWEENSEWYSETTK 372
LR +++E GR +Y+A + D LK KY++ H+LD +++LW +S+W+ E +
Sbjct: 362 LRRRIEERLNGGGRQVYVAGEGINVVLLDALKAKYSSVHYLDAFEELWARDSKWFLEMKR 421
Query: 371 LNNGVPVEFDGYMRVSIDTEVFLRGKKQLE 282
LN GVPVEFDGYMR +D EVFL+GKK++E
Sbjct: 422 LNGGVPVEFDGYMRELVDREVFLKGKKKVE 451
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 396,045,510
Number of Sequences: 1393205
Number of extensions: 7891644
Number of successful extensions: 23101
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23074
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
