Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018387A_C01 KMC018387A_c01
(560 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198106.1| putative protein; protein id: At5g27540.1, supp... 109 2e-23
dbj|BAB86462.1| rac-GTP binding protein -like [Oryza sativa (jap... 103 1e-21
pir||T48104 rac-GTP binding protein-like - Arabidopsis thaliana ... 94 9e-19
ref|NP_567139.1| rac-GTP binding protein -like; protein id: At3g... 94 9e-19
gb|AAL25592.1| AT3g63150/T20O10_250 [Arabidopsis thaliana] gi|22... 94 9e-19
>ref|NP_198106.1| putative protein; protein id: At5g27540.1, supported by cDNA:
gi_19698866 [Arabidopsis thaliana]
gi|19698867|gb|AAL91169.1| unknown protein [Arabidopsis
thaliana] gi|28058938|gb|AAO29970.1| unknown protein
[Arabidopsis thaliana]
Length = 648
Score = 109 bits (273), Expect = 2e-23
Identities = 49/89 (55%), Positives = 70/89 (78%)
Frame = -2
Query: 559 SVKVTEELGIEGPIHVSMKSGDSSNVYNKIISAAEHPHLSIPETEIGRKRKQYRRLLQNS 380
S ++T+++GIE P+ +S K GD +N++ KI++AA+HPHLSIPETE G+ RK Y RL+ S
Sbjct: 560 STRMTQDMGIEPPVSISSKLGDFNNLFRKILTAAQHPHLSIPETEAGKSRKHYNRLINRS 619
Query: 379 LIYASVGTAVAVVGVAAFRVYAMKKNSSA 293
L+ S+G A VVG+AA+RVYA +K+SSA
Sbjct: 620 LMAVSIGAAAVVVGLAAYRVYATRKSSSA 648
>dbj|BAB86462.1| rac-GTP binding protein -like [Oryza sativa (japonica
cultivar-group)]
Length = 634
Score = 103 bits (257), Expect = 1e-21
Identities = 49/89 (55%), Positives = 69/89 (77%)
Frame = -2
Query: 559 SVKVTEELGIEGPIHVSMKSGDSSNVYNKIISAAEHPHLSIPETEIGRKRKQYRRLLQNS 380
S +V+ ++GIE PI +S++ D +N++ +I+ AA+ PHLSIPETE G+ +QYR+LL S
Sbjct: 546 STRVSHDMGIETPIPISVRLRDLNNIFCRIVHAAQQPHLSIPETEAGKTHRQYRQLLNRS 605
Query: 379 LIYASVGTAVAVVGVAAFRVYAMKKNSSA 293
L SVG AVAVVGVAA+RVYA +KN+S+
Sbjct: 606 LTVVSVGAAVAVVGVAAYRVYAARKNASS 634
>pir||T48104 rac-GTP binding protein-like - Arabidopsis thaliana
gi|7573444|emb|CAB87760.1| rac-GTP binding protein-like
[Arabidopsis thaliana]
Length = 676
Score = 94.4 bits (233), Expect = 9e-19
Identities = 42/87 (48%), Positives = 68/87 (77%)
Frame = -2
Query: 559 SVKVTEELGIEGPIHVSMKSGDSSNVYNKIISAAEHPHLSIPETEIGRKRKQYRRLLQNS 380
S +V ELGI+ P+ +SMK G+ ++++++I+S AE+PH+SIPETE GR+ + R+L+ +S
Sbjct: 590 SDRVCMELGIDIPVSLSMKLGEPNSLFSRIVSTAENPHMSIPETESGRRSRNIRQLVNSS 649
Query: 379 LIYASVGTAVAVVGVAAFRVYAMKKNS 299
L++ SVGTAV G+AA+R Y+ +KN+
Sbjct: 650 LLFVSVGTAVGFAGLAAYRAYSARKNA 676
>ref|NP_567139.1| rac-GTP binding protein -like; protein id: At3g63150.1, supported
by cDNA: gi_16648802 [Arabidopsis thaliana]
Length = 643
Score = 94.4 bits (233), Expect = 9e-19
Identities = 42/87 (48%), Positives = 68/87 (77%)
Frame = -2
Query: 559 SVKVTEELGIEGPIHVSMKSGDSSNVYNKIISAAEHPHLSIPETEIGRKRKQYRRLLQNS 380
S +V ELGI+ P+ +SMK G+ ++++++I+S AE+PH+SIPETE GR+ + R+L+ +S
Sbjct: 557 SDRVCMELGIDIPVSLSMKLGEPNSLFSRIVSTAENPHMSIPETESGRRSRNIRQLVNSS 616
Query: 379 LIYASVGTAVAVVGVAAFRVYAMKKNS 299
L++ SVGTAV G+AA+R Y+ +KN+
Sbjct: 617 LLFVSVGTAVGFAGLAAYRAYSARKNA 643
>gb|AAL25592.1| AT3g63150/T20O10_250 [Arabidopsis thaliana]
gi|22655380|gb|AAM98282.1| At3g63150/T20O10_250
[Arabidopsis thaliana]
Length = 643
Score = 94.4 bits (233), Expect = 9e-19
Identities = 42/87 (48%), Positives = 68/87 (77%)
Frame = -2
Query: 559 SVKVTEELGIEGPIHVSMKSGDSSNVYNKIISAAEHPHLSIPETEIGRKRKQYRRLLQNS 380
S +V ELGI+ P+ +SMK G+ ++++++I+S AE+PH+SIPETE GR+ + R+L+ +S
Sbjct: 557 SDRVCMELGIDIPVSLSMKLGEPNSLFSRIVSTAENPHMSIPETESGRRSRNIRQLVNSS 616
Query: 379 LIYASVGTAVAVVGVAAFRVYAMKKNS 299
L++ SVGTAV G+AA+R Y+ +KN+
Sbjct: 617 LLFVSVGTAVGFAGLAAYRAYSARKNA 643
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 437,590,072
Number of Sequences: 1393205
Number of extensions: 8773840
Number of successful extensions: 22420
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 21506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22399
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
