Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018380A_C01 KMC018380A_c01
(433 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568396.1| ring-box protein - like; protein id: At5g20570.... 166 5e-41
gb|AAL87158.1|AF480496_12 putative ring box-1 protein [Oryza sat... 166 5e-41
gb|EAA09407.1| agCP15018 [Anopheles gambiae str. PEST] 164 2e-40
gb|AAK29182.1| hyperosmotic protein 21 [Salmo salar] 164 2e-40
ref|NP_055063.1| ring-box 1; RING box protein 1; regulator of cu... 164 2e-40
>ref|NP_568396.1| ring-box protein - like; protein id: At5g20570.1, supported by
cDNA: 29408., supported by cDNA: gi_16186264, supported
by cDNA: gi_18252990 [Arabidopsis thaliana]
gi|16186265|gb|AAL13435.1| ring box-1-like protein
[Arabidopsis thaliana] gi|18252991|gb|AAL62422.1|
ring-box protein - like [Arabidopsis thaliana]
gi|21389679|gb|AAM48038.1| ring-box protein-like
[Arabidopsis thaliana] gi|21592528|gb|AAM64477.1|
ring-box protein-like [Arabidopsis thaliana]
gi|26451409|dbj|BAC42804.1| putative ring-box protein
[Arabidopsis thaliana]
Length = 118
Score = 166 bits (421), Expect = 5e-41
Identities = 70/74 (94%), Positives = 73/74 (98%)
Frame = -3
Query: 431 WDIVVDNCAICRNHIMDRCIECQANQASSTADECTVAWGVCNHAFHFHCISRWLKTRQVC 252
WDIVVDNCAICRNHIMD CIECQANQAS+T++ECTVAWGVCNHAFHFHCISRWLKTRQVC
Sbjct: 45 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC 104
Query: 251 PLDNSEWEFQKYGH 210
PLDNSEWEFQKYGH
Sbjct: 105 PLDNSEWEFQKYGH 118
>gb|AAL87158.1|AF480496_12 putative ring box-1 protein [Oryza sativa (japonica
cultivar-group)]
Length = 114
Score = 166 bits (421), Expect = 5e-41
Identities = 70/74 (94%), Positives = 73/74 (98%)
Frame = -3
Query: 431 WDIVVDNCAICRNHIMDRCIECQANQASSTADECTVAWGVCNHAFHFHCISRWLKTRQVC 252
WDIVVDNCAICRNHIMD CIECQANQAS+T++ECTVAWGVCNHAFHFHCISRWLKTRQVC
Sbjct: 41 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC 100
Query: 251 PLDNSEWEFQKYGH 210
PLDNSEWEFQKYGH
Sbjct: 101 PLDNSEWEFQKYGH 114
>gb|EAA09407.1| agCP15018 [Anopheles gambiae str. PEST]
Length = 174
Score = 164 bits (416), Expect = 2e-40
Identities = 69/74 (93%), Positives = 72/74 (97%)
Frame = -3
Query: 431 WDIVVDNCAICRNHIMDRCIECQANQASSTADECTVAWGVCNHAFHFHCISRWLKTRQVC 252
WDIVVDNCAICRNHIMD CIECQANQAS+T++ECTVAWGVCNHAFHFHCISRWLKTRQVC
Sbjct: 101 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC 160
Query: 251 PLDNSEWEFQKYGH 210
PLDN EWEFQKYGH
Sbjct: 161 PLDNREWEFQKYGH 174
>gb|AAK29182.1| hyperosmotic protein 21 [Salmo salar]
Length = 189
Score = 164 bits (416), Expect = 2e-40
Identities = 69/74 (93%), Positives = 72/74 (97%)
Frame = -3
Query: 431 WDIVVDNCAICRNHIMDRCIECQANQASSTADECTVAWGVCNHAFHFHCISRWLKTRQVC 252
WDIVVDNCAICRNHIMD CIECQANQAS+T++ECTVAWGVCNHAFHFHCISRWLKTRQVC
Sbjct: 116 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC 175
Query: 251 PLDNSEWEFQKYGH 210
PLDN EWEFQKYGH
Sbjct: 176 PLDNREWEFQKYGH 189
>ref|NP_055063.1| ring-box 1; RING box protein 1; regulator of cullins 1; RING finger
protein; ZYP protein [Homo sapiens]
gi|9790191|ref|NP_062686.1| ring-box 1; ring-box protein
1 [Mus musculus] gi|27662948|ref|XP_216991.1| similar to
ring-box 1 [Mus musculus] [Rattus norvegicus]
gi|11282556|pir||T51146 ring-box protein 1 [imported] -
human gi|4769004|gb|AAD29715.1|AF140598_1 ring-box
protein 1 [Homo sapiens]
gi|4769006|gb|AAD29716.1|AF140599_1 ring-box protein 1
[Mus musculus] gi|4809216|gb|AAD30146.1|AF142059_1 RING
finger protein [Homo sapiens]
gi|12655215|gb|AAH01466.1|AAH01466 ring-box 1 [Homo
sapiens] gi|16924202|gb|AAH17370.1|AAH17370 ring-box 1
[Homo sapiens]
Length = 108
Score = 164 bits (416), Expect = 2e-40
Identities = 69/74 (93%), Positives = 72/74 (97%)
Frame = -3
Query: 431 WDIVVDNCAICRNHIMDRCIECQANQASSTADECTVAWGVCNHAFHFHCISRWLKTRQVC 252
WDIVVDNCAICRNHIMD CIECQANQAS+T++ECTVAWGVCNHAFHFHCISRWLKTRQVC
Sbjct: 35 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC 94
Query: 251 PLDNSEWEFQKYGH 210
PLDN EWEFQKYGH
Sbjct: 95 PLDNREWEFQKYGH 108
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 349,567,000
Number of Sequences: 1393205
Number of extensions: 6804549
Number of successful extensions: 18904
Number of sequences better than 10.0: 826
Number of HSP's better than 10.0 without gapping: 18402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18856
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 6789548448
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
