Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018379A_C01 KMC018379A_c01
(722 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567042.1| RRM-containing RNA-binding protein; protein id:... 150 2e-35
gb|AAK68825.1| putative protein [Arabidopsis thaliana] gi|201483... 149 4e-35
gb|AAM73765.1|AF403292_1 RNA-binding protein AKIP1 [Vicia faba] 147 2e-34
ref|NP_181639.1| RRM-containing RNA-binding protein; protein id:... 142 5e-33
dbj|BAA90354.1| unnamed protein product [Oryza sativa (japonica ... 121 9e-27
>ref|NP_567042.1| RRM-containing RNA-binding protein; protein id: At3g56860.1,
supported by cDNA: gi_14194148, supported by cDNA:
gi_14335131, supported by cDNA: gi_14596194, supported
by cDNA: gi_20148396, supported by cDNA: gi_20259481
[Arabidopsis thaliana] gi|11358431|pir||T51274
hypothetical protein T8M16_190 - Arabidopsis thaliana
gi|9663005|emb|CAC00749.1| putative protein [Arabidopsis
thaliana] gi|14194149|gb|AAK56269.1|AF367280_1
AT3g56860/T8M16_190 [Arabidopsis thaliana]
gi|14335132|gb|AAK59846.1| AT3g56860/T8M16_190
[Arabidopsis thaliana] gi|19682816|emb|CAD28672.1| UBP1
interacting protein 2a [Arabidopsis thaliana]
gi|20259482|gb|AAM13861.1| unknown protein [Arabidopsis
thaliana] gi|21436451|gb|AAM51426.1| unknown protein
[Arabidopsis thaliana] gi|22137068|gb|AAM91379.1|
At3g56860/T8M16_190 [Arabidopsis thaliana]
Length = 478
Score = 150 bits (379), Expect = 2e-35
Identities = 78/178 (43%), Positives = 114/178 (63%), Gaps = 3/178 (1%)
Frame = +3
Query: 198 EEPEEQDQET--EDQPQIDDAVEEEQDPEAPATTESEPQQQQETLEDN-ADAPNESSAAA 368
EEP ++ ++T E+Q + + + D E E E +Q++E +D+ D +E+
Sbjct: 16 EEPSQKLKQTPEEEQQLVIKNQDNQGDVEEVEYEEVEEEQEEEVEDDDDEDDGDENEDQT 75
Query: 369 AAAASESVANGSNNNEEEEEEEDLELEEEPVERLLEPFTREQLHSLVKQAAEKYPDFVEN 548
E+ A + N+E++++E P++ LLEPF++EQ+ SL+K+AAEK+ D
Sbjct: 76 DGNRIEAAATSGSGNQEDDDDE-------PIQDLLEPFSKEQVLSLLKEAAEKHVDVANR 128
Query: 549 VRQLADVDPAHRKIFVHGLGWDTTAETLTSVFSKYGEIEDCKAVTDKVTGKSKGYAFI 722
+R++AD DP HRKIFVHGLGWDT ETL F +YGEIEDCKAV DK++GKSKGY FI
Sbjct: 129 IREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
Score = 48.5 bits (114), Expect = 9e-05
Identities = 66/297 (22%), Positives = 111/297 (37%), Gaps = 68/297 (22%)
Frame = +3
Query: 27 MAKKRK-QPQRSPAVEPAAKPVDVEPQDQDSVELDHQQPPNPVPTTDLDQSNNTMAVDEE 203
M KKRK + + S E ++ + P+++ + + +Q V + + E
Sbjct: 1 MTKKRKLEGEESNEAEEPSQKLKQTPEEEQQLVIKNQDNQGDVEEVEYE---------EV 51
Query: 204 PEEQDQETEDQPQIDDAVEEEQDP-----EAPATTESEPQQQQ--ETLEDNADA-PNESS 359
EEQ++E ED DD E E EA AT+ S Q+ E ++D + E
Sbjct: 52 EEEQEEEVEDDDDEDDGDENEDQTDGNRIEAAATSGSGNQEDDDDEPIQDLLEPFSKEQV 111
Query: 360 AAAAAAASESVANGSNNNEEEEEEEDLELE--------EEPVERLLEPF----------- 482
+ A+E + +N E +E+ + + + E L+E F
Sbjct: 112 LSLLKEAAEKHVDVANRIREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKA 171
Query: 483 ------------------TREQLHSLVKQA-------------AEKYPDF---------V 542
+R + +KQ A K P F V
Sbjct: 172 VFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKGPVFGGAPIAAAAV 231
Query: 543 ENVRQLADVDPAHRKIFVHGLGWDTTAETLTSVFSKYGEIEDCKAVTDKVTGKSKGY 713
Q ++ + +KI+V +G + + L FSK+GEIE+ DK TG+ KG+
Sbjct: 232 SAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGF 288
>gb|AAK68825.1| putative protein [Arabidopsis thaliana] gi|20148397|gb|AAM10089.1|
putative protein [Arabidopsis thaliana]
Length = 478
Score = 149 bits (376), Expect = 4e-35
Identities = 75/176 (42%), Positives = 113/176 (63%), Gaps = 1/176 (0%)
Frame = +3
Query: 198 EEPEEQDQET-EDQPQIDDAVEEEQDPEAPATTESEPQQQQETLEDNADAPNESSAAAAA 374
EEP ++ ++T E++ Q+ ++ Q E ++Q+E +ED+ D +
Sbjct: 16 EEPSQKLKQTPEEEQQLVIKNQDNQGDVEEVEYEEVEEEQEEEVEDDDDEDDGDENEDQT 75
Query: 375 AASESVANGSNNNEEEEEEEDLELEEEPVERLLEPFTREQLHSLVKQAAEKYPDFVENVR 554
+ A ++ + ++E+++D EP++ LLEPF++EQ+ SL+K+AAEK+ D +R
Sbjct: 76 DGNRIEAAATSGSGDQEDDDD-----EPIQDLLEPFSKEQVLSLLKEAAEKHVDVANRIR 130
Query: 555 QLADVDPAHRKIFVHGLGWDTTAETLTSVFSKYGEIEDCKAVTDKVTGKSKGYAFI 722
++AD DP HRKIFVHGLGWDT ETL F +YGEIEDCKAV DK++GKSKGY FI
Sbjct: 131 EVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFI 186
Score = 48.9 bits (115), Expect = 7e-05
Identities = 66/297 (22%), Positives = 111/297 (37%), Gaps = 68/297 (22%)
Frame = +3
Query: 27 MAKKRK-QPQRSPAVEPAAKPVDVEPQDQDSVELDHQQPPNPVPTTDLDQSNNTMAVDEE 203
M KKRK + + S E ++ + P+++ + + +Q V + + E
Sbjct: 1 MTKKRKLEGEESNEAEEPSQKLKQTPEEEQQLVIKNQDNQGDVEEVEYE---------EV 51
Query: 204 PEEQDQETEDQPQIDDAVEEEQDP-----EAPATTESEPQQQQ--ETLEDNADA-PNESS 359
EEQ++E ED DD E E EA AT+ S Q+ E ++D + E
Sbjct: 52 EEEQEEEVEDDDDEDDGDENEDQTDGNRIEAAATSGSGDQEDDDDEPIQDLLEPFSKEQV 111
Query: 360 AAAAAAASESVANGSNNNEEEEEEEDLELE--------EEPVERLLEPF----------- 482
+ A+E + +N E +E+ + + + E L+E F
Sbjct: 112 LSLLKEAAEKHVDVANRIREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKA 171
Query: 483 ------------------TREQLHSLVKQA-------------AEKYPDF---------V 542
+R + +KQ A K P F V
Sbjct: 172 VFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKGPVFGGAPIAAAAV 231
Query: 543 ENVRQLADVDPAHRKIFVHGLGWDTTAETLTSVFSKYGEIEDCKAVTDKVTGKSKGY 713
Q ++ + +KI+V +G + + L FSK+GEIE+ DK TG+ KG+
Sbjct: 232 SAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGF 288
>gb|AAM73765.1|AF403292_1 RNA-binding protein AKIP1 [Vicia faba]
Length = 515
Score = 147 bits (370), Expect = 2e-34
Identities = 81/200 (40%), Positives = 115/200 (57%), Gaps = 11/200 (5%)
Frame = +3
Query: 156 TTDLDQSNNTMAVDEEPEEQDQETEDQPQIDDAVEEEQDPEA-PATTESEPQQQQETLED 332
TT + + TM + + + E+ P + + DPE P E +++ E +E+
Sbjct: 11 TTFVSREQQTMVRKRKLVAKSSQPEEPPLKQHHSQPQPDPEPEPYIPTEEVEEEYEEVEE 70
Query: 333 NADAPNESSAAAAAAASESVANGSNNNEEEEEEED----------LELEEEPVERLLEPF 482
+ E EEEEEEED LE ++EP++ L+EPF
Sbjct: 71 EYEEVEEIEV-------------EEEEEEEEEEEDGGEQAQGGEYLEEDDEPIKDLVEPF 117
Query: 483 TREQLHSLVKQAAEKYPDFVENVRQLADVDPAHRKIFVHGLGWDTTAETLTSVFSKYGEI 662
T+EQ+ +L+ +AA K+ D + +R++AD D +HRKIFVHGLGWDTT+ TL + FS+YGEI
Sbjct: 118 TKEQIATLLCEAAAKHRDVADRIRKIADGDASHRKIFVHGLGWDTTSATLINAFSQYGEI 177
Query: 663 EDCKAVTDKVTGKSKGYAFI 722
EDCKAVTDK +GKSKGY FI
Sbjct: 178 EDCKAVTDKASGKSKGYGFI 197
Score = 47.0 bits (110), Expect = 3e-04
Identities = 58/274 (21%), Positives = 108/274 (39%), Gaps = 40/274 (14%)
Frame = +3
Query: 12 PSFTAMAKKRKQPQRSPAVEPAAKPVDVEPQDQDSVELDHQQPPNPVPTTDLDQSNNTMA 191
P + + QPQ P EP +VE ++ + VE ++++ V ++++
Sbjct: 34 PEEPPLKQHHSQPQPDPEPEPYIPTEEVE-EEYEEVEEEYEE----VEEIEVEE------ 82
Query: 192 VDEEPEEQDQETEDQPQIDDAVEEEQDP----------EAPATTESEPQQQQETLED--- 332
+EE EE++++ +Q Q + +EE+ +P E AT E + + D
Sbjct: 83 -EEEEEEEEEDGGEQAQGGEYLEEDDEPIKDLVEPFTKEQIATLLCEAAAKHRDVADRIR 141
Query: 333 ---NADAPNESSAAAAAAASESVANGSNNNEEEEEEEDLELEEEPVERLLEPF------T 485
+ DA + + A N + E ED + + + +
Sbjct: 142 KIADGDASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKASGKSKGYGFILFKK 201
Query: 486 REQLHSLVKQAAEKYPDFVENVRQLADVDPA------------------HRKIFVHGLGW 611
R + +K+ +K + + QLA + P RKI++ +G
Sbjct: 202 RSGARNALKEPQKKIGNRM-TACQLASIGPVAQTPQPAVQLVQPGSEYTQRKIYISNVGP 260
Query: 612 DTTAETLTSVFSKYGEIEDCKAVTDKVTGKSKGY 713
+ L + FS++GEIE+ DK TGK KG+
Sbjct: 261 ELDPHKLFAYFSRFGEIEEGPLGLDKATGKPKGF 294
>ref|NP_181639.1| RRM-containing RNA-binding protein; protein id: At2g41060.1,
supported by cDNA: gi_16612301 [Arabidopsis thaliana]
gi|7487621|pir||T02113 probable RNA-binding protein
At2g41060 [imported] - Arabidopsis thaliana
gi|3402711|gb|AAD12005.1| putative RNA-binding protein
[Arabidopsis thaliana]
gi|16612302|gb|AAL27512.1|AF439844_1 At2g41060/T3K9.17
[Arabidopsis thaliana] gi|22137136|gb|AAM91413.1|
At2g41060/T3K9.17 [Arabidopsis thaliana]
Length = 451
Score = 142 bits (358), Expect = 5e-33
Identities = 72/172 (41%), Positives = 100/172 (57%)
Frame = +3
Query: 207 EEQDQETEDQPQIDDAVEEEQDPEAPATTESEPQQQQETLEDNADAPNESSAAAAAAASE 386
E + ET + + E++DPE +Q +D +E A
Sbjct: 8 ESESNETSEPTEKQQQQCEKEDPEIRNVDNQRDDDEQVVEQDTLKEMHEEEAKGEDNIEA 67
Query: 387 SVANGSNNNEEEEEEEDLELEEEPVERLLEPFTREQLHSLVKQAAEKYPDFVENVRQLAD 566
++GS N E+++E EEP+E LLEPF+++QL L+K+AAE++ D +R +AD
Sbjct: 68 ETSSGSGNQGNEDDDE-----EEPIEDLLEPFSKDQLLILLKEAAERHRDVANRIRIVAD 122
Query: 567 VDPAHRKIFVHGLGWDTTAETLTSVFSKYGEIEDCKAVTDKVTGKSKGYAFI 722
D HRKIFVHGLGWDT A++L F +YGEIEDCK V DKV+G+SKGY FI
Sbjct: 123 EDLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFI 174
Score = 40.4 bits (93), Expect = 0.025
Identities = 19/45 (42%), Positives = 27/45 (59%)
Frame = +3
Query: 582 RKIFVHGLGWDTTAETLTSVFSKYGEIEDCKAVTDKVTGKSKGYA 716
RKI+V + D + L FS++GEIE+ DK TG+ KG+A
Sbjct: 227 RKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFA 271
>dbj|BAA90354.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 490
Score = 121 bits (304), Expect = 9e-27
Identities = 69/173 (39%), Positives = 91/173 (51%), Gaps = 25/173 (14%)
Frame = +3
Query: 279 APATTESEPQQQQETLEDNADAPNESSAAAAAAASESVANGSNNNEEEEEEEDLELEEE- 455
A A +EP Q E L ++ ++ ++ A E + + EEEE E++E+EEE
Sbjct: 30 AAAAAVAEPSSQPEALAEDPAPSSQPLGLSSEGAGERMMSREAGGGEEEEVEEVEVEEEV 89
Query: 456 ------------------------PVERLLEPFTREQLHSLVKQAAEKYPDFVENVRQLA 563
++ LL F ++QL L+ AA + D + V + A
Sbjct: 90 EVDEDEDGEGEGEEEEEAAERDADSIQALLNSFPKDQLVELLSAAALSHEDVLTAVHRAA 149
Query: 564 DVDPAHRKIFVHGLGWDTTAETLTSVFSKYGEIEDCKAVTDKVTGKSKGYAFI 722
D DPA RKIFVHGLGWD TAETLT FS YGEIED + VTD+ TGK KGY FI
Sbjct: 150 DADPALRKIFVHGLGWDATAETLTEAFSAYGEIEDLRVVTDRATGKCKGYGFI 202
Score = 49.3 bits (116), Expect = 5e-05
Identities = 25/45 (55%), Positives = 29/45 (63%)
Frame = +3
Query: 582 RKIFVHGLGWDTTAETLTSVFSKYGEIEDCKAVTDKVTGKSKGYA 716
RKIFV +G D + L FSKYGEIE+ DKVTGK KG+A
Sbjct: 267 RKIFVSNVGADIDPQKLLQFFSKYGEIEEGPLGLDKVTGKPKGFA 311
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 729,226,430
Number of Sequences: 1393205
Number of extensions: 20192393
Number of successful extensions: 327256
Number of sequences better than 10.0: 8843
Number of HSP's better than 10.0 without gapping: 137923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240883
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33780557640
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
