Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018371A_C01 KMC018371A_c01
(646 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO44029.1| At1g11760 [Arabidopsis thaliana] 55 6e-07
gb|AAK43496.1|AC020666_6 hypothetical protein [Oryza sativa (jap... 54 2e-06
pir||D86251 protein F25C20.9 [imported] - Arabidopsis thaliana g... 43 0.003
ref|NP_172641.1| hypothetical protein; protein id: At1g11760.1 [... 42 0.005
gb|EAA22581.1| hypothetical protein [Plasmodium yoelii yoelii] 33 2.5
>gb|AAO44029.1| At1g11760 [Arabidopsis thaliana]
Length = 151
Score = 55.5 bits (132), Expect = 6e-07
Identities = 31/49 (63%), Positives = 37/49 (75%), Gaps = 2/49 (4%)
Frame = -2
Query: 645 VRLEQMSKAVRWLVIELQHGSG--SGSANSALSHPSAPFDARFSEDAAQ 505
VRLEQMS+AVRWLV+ELQ GSG GS +S+ S FD+RFSED+ Q
Sbjct: 107 VRLEQMSRAVRWLVLELQRGSGVAPGSVHSS----STGFDSRFSEDSTQ 151
>gb|AAK43496.1|AC020666_6 hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 160
Score = 53.5 bits (127), Expect = 2e-06
Identities = 32/61 (52%), Positives = 33/61 (53%), Gaps = 14/61 (22%)
Frame = -2
Query: 645 VRLEQMSKAVRWLVIELQHGSGSGSA--------------NSALSHPSAPFDARFSEDAA 508
VRLEQMSKAVRWLVIELQHG+G SA A H D RF ED A
Sbjct: 100 VRLEQMSKAVRWLVIELQHGAGGASAAGPGGGGGAAAAASGVAGQHGHGGVDTRFPEDGA 159
Query: 507 Q 505
Q
Sbjct: 160 Q 160
>pir||D86251 protein F25C20.9 [imported] - Arabidopsis thaliana
gi|4835781|gb|AAD30247.1|AC007296_8 F25C20.9
[Arabidopsis thaliana]
Length = 417
Score = 43.1 bits (100), Expect = 0.003
Identities = 22/31 (70%), Positives = 26/31 (82%), Gaps = 2/31 (6%)
Frame = -2
Query: 645 VRLEQMSKAVRWLVIELQHGSG--SGSANSA 559
VRLEQMS+AVRWLV+ELQ GSG GS +S+
Sbjct: 129 VRLEQMSRAVRWLVLELQRGSGVAPGSVHSS 159
>ref|NP_172641.1| hypothetical protein; protein id: At1g11760.1 [Arabidopsis
thaliana]
Length = 393
Score = 42.4 bits (98), Expect = 0.005
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = -2
Query: 645 VRLEQMSKAVRWLVIELQHGSG 580
VRLEQMS+AVRWLV+ELQ GSG
Sbjct: 129 VRLEQMSRAVRWLVLELQRGSG 150
>gb|EAA22581.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 2522
Score = 33.5 bits (75), Expect = 2.5
Identities = 24/76 (31%), Positives = 36/76 (46%)
Frame = +3
Query: 414 NVVSFRDEFEGSLKFDPENVNHNSYFNSNAIEQHLRRTWHQKELRDGKELN*QNQIQIHA 593
NV + + + D E+ N N+Y N E HL++ +QK L D K N N I
Sbjct: 775 NVYPYTCSIKNNNTHDTESNNINNYILDNIDENHLKKENNQKNLNDIKINNKNNFIN--- 831
Query: 594 AIQSQATEQLYSFVPS 641
++ ++ LYS PS
Sbjct: 832 --RNINSDHLYSVNPS 845
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 534,162,401
Number of Sequences: 1393205
Number of extensions: 11024331
Number of successful extensions: 24600
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 23434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24595
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
