Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018370A_C01 KMC018370A_c01
(577 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179688.1| unknown protein; protein id: At2g20920.1, suppo... 99 4e-20
gb|ZP_00111766.1| hypothetical protein [Nostoc punctiforme] 37 0.18
ref|NP_442262.1| Na/H+ antiporter [Synechocystis sp. PCC 6803] g... 33 3.4
ref|NP_765922.1| conserved hypothetical protein [Staphylococcus ... 32 5.7
ref|NP_792786.1| branched-chain amino acid ABC transporter, perm... 32 7.5
>ref|NP_179688.1| unknown protein; protein id: At2g20920.1, supported by cDNA:
gi_17978971 [Arabidopsis thaliana]
gi|25412002|pir||H84594 hypothetical protein At2g20920
[imported] - Arabidopsis thaliana
gi|4454458|gb|AAD20905.1| unknown protein [Arabidopsis
thaliana] gi|17978972|gb|AAL47447.1| At2g20920/F5H14.11
[Arabidopsis thaliana] gi|21700805|gb|AAM70526.1|
At2g20920/F5H14.11 [Arabidopsis thaliana]
Length = 287
Score = 99.0 bits (245), Expect = 4e-20
Identities = 47/64 (73%), Positives = 53/64 (82%)
Frame = -2
Query: 576 KKNVKLGKAVGITIGGLIVGAVVGSAVENWLQVDIVPFLGIHSPAAVVGEIIIISQFLVS 397
KK VKLGKA +T GGL+ GAVVGSA+E WL VD+VPFLG+HSPAAVV E I+ SQFLVS
Sbjct: 224 KKKVKLGKAAALTAGGLVAGAVVGSAIETWLHVDVVPFLGLHSPAAVVSEFIVFSQFLVS 283
Query: 396 LYLR 385
L LR
Sbjct: 284 LCLR 287
Score = 44.7 bits (104), Expect = 9e-04
Identities = 23/40 (57%), Positives = 29/40 (72%)
Frame = -2
Query: 240 SAVENSLRVAIVSYLDIHYPASVLSEIIVVSQLLVSLYLR 121
SA+E L V +V +L +H PA+V+SE IV SQ LVSL LR
Sbjct: 248 SAIETWLHVDVVPFLGLHSPAAVVSEFIVFSQFLVSLCLR 287
>gb|ZP_00111766.1| hypothetical protein [Nostoc punctiforme]
Length = 209
Score = 37.0 bits (84), Expect = 0.18
Identities = 25/66 (37%), Positives = 37/66 (55%), Gaps = 2/66 (3%)
Frame = -2
Query: 576 KKNVKLGKAVGITIGGLIVGAVVGSAVENWLQVDIVPF--LGIHSPAAVVGEIIIISQFL 403
+K K G+AV T+ LI+G + G V +WL I F LG + + VV I++ +L
Sbjct: 147 RKEGKFGRAVLFTLISLIIGLIAGGLVASWLLPQISSFTNLGTNQFSTVVTFILL---WL 203
Query: 402 VSLYLR 385
VS +LR
Sbjct: 204 VSSFLR 209
>ref|NP_442262.1| Na/H+ antiporter [Synechocystis sp. PCC 6803]
gi|7451789|pir||S74414 Na+/H+-exchanging protein sll0689
- Synechocystis sp. (strain PCC 6803)
gi|1001188|dbj|BAA10332.1| Na/H+ antiporter
[Synechocystis sp. PCC 6803]
Length = 461
Score = 32.7 bits (73), Expect = 3.4
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Frame = -2
Query: 561 LGKAVGITIGGLIVGAVVGSAVENW-LQVDIVPFLGIHSPAAVVGEIII---ISQFLVSL 394
+G AV I G+IV AVVGS V+ +Q+ + +L + + VVG I+I +S F VSL
Sbjct: 211 IGAAVLDDILGIIVLAVVGSLVKTGEIQISNIIYLILSATGFVVGSILIGRLLSPFYVSL 270
Query: 393 YLR 385
R
Sbjct: 271 VNR 273
>ref|NP_765922.1| conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228] gi|27316835|gb|AAO06010.1|AE016752_43 conserved
hypothetical protein [Staphylococcus epidermidis ATCC
12228]
Length = 84
Score = 32.0 bits (71), Expect = 5.7
Identities = 25/60 (41%), Positives = 35/60 (57%), Gaps = 1/60 (1%)
Frame = -2
Query: 561 LGKAVGITIGGLIVGAVVGSAVENWLQVDIVPFLG-IHSPAAVVGEIIIISQFLVSLYLR 385
LGK V I G I+ +VGS V + + P LG IH A++G II+I F++SL L+
Sbjct: 22 LGKDVPGGILGNIIAGIVGSWVGTMILGEWGPQLGKIHIFPALLGSIILI--FIISLILK 79
>ref|NP_792786.1| branched-chain amino acid ABC transporter, permease protein
[Pseudomonas syringae pv. tomato str. DC3000]
gi|28853413|gb|AAO56481.1| branched-chain amino acid ABC
transporter, permease protein [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 293
Score = 31.6 bits (70), Expect = 7.5
Identities = 16/51 (31%), Positives = 25/51 (48%), Gaps = 11/51 (21%)
Frame = -2
Query: 546 GITIGGLIVGA-----------VVGSAVENWLQVDIVPFLGIHSPAAVVGE 427
G +GGLI+GA ++GS +ENW+ + + PA + GE
Sbjct: 237 GAIVGGLIIGASEKLAEIYLGPIIGSGIENWVPYVLALLFLLVRPAGLFGE 287
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 499,152,616
Number of Sequences: 1393205
Number of extensions: 10669078
Number of successful extensions: 30510
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 28015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30416
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
