Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018369A_C01 KMC018369A_c01
(575 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179620.2| putative protein kinase; protein id: At2g20300.... 97 2e-19
pir||E84587 probable protein kinase [imported] - Arabidopsis tha... 97 2e-19
ref|NP_441711.1| eukariotic protein kinase [Synechocystis sp. PC... 32 4.4
>ref|NP_179620.2| putative protein kinase; protein id: At2g20300.1, supported by
cDNA: gi_20259542 [Arabidopsis thaliana]
gi|20259543|gb|AAM13891.1| putative protein kinase
[Arabidopsis thaliana] gi|22136896|gb|AAM91792.1|
putative protein kinase [Arabidopsis thaliana]
Length = 744
Score = 96.7 bits (239), Expect = 2e-19
Identities = 56/92 (60%), Positives = 67/92 (71%), Gaps = 4/92 (4%)
Frame = -3
Query: 540 VTPRLTYGQASSFITMDYSSGPLEDMENRPFSTSSL--IGDEVSLPIRHGNRSGPLRTVR 367
+TPRL YGQASSFITMDYSSGPLEDMENRP S SS+ +G + LP NRSGPLR +R
Sbjct: 658 LTPRLRYGQASSFITMDYSSGPLEDMENRPHSASSIPRVGGLI-LP----NRSGPLRPMR 712
Query: 366 NKLSLHRFSGSRSEHGGVSSKRK-WN-DGYWV 277
++ + R GS SEHGG SS R W+ +G W+
Sbjct: 713 SRRNFFRLRGSMSEHGGPSSSRHLWSGNGDWL 744
>pir||E84587 probable protein kinase [imported] - Arabidopsis thaliana
gi|4512705|gb|AAD21758.1| putative protein kinase
[Arabidopsis thaliana]
Length = 435
Score = 96.7 bits (239), Expect = 2e-19
Identities = 56/92 (60%), Positives = 67/92 (71%), Gaps = 4/92 (4%)
Frame = -3
Query: 540 VTPRLTYGQASSFITMDYSSGPLEDMENRPFSTSSL--IGDEVSLPIRHGNRSGPLRTVR 367
+TPRL YGQASSFITMDYSSGPLEDMENRP S SS+ +G + LP NRSGPLR +R
Sbjct: 349 LTPRLRYGQASSFITMDYSSGPLEDMENRPHSASSIPRVGGLI-LP----NRSGPLRPMR 403
Query: 366 NKLSLHRFSGSRSEHGGVSSKRK-WN-DGYWV 277
++ + R GS SEHGG SS R W+ +G W+
Sbjct: 404 SRRNFFRLRGSMSEHGGPSSSRHLWSGNGDWL 435
>ref|NP_441711.1| eukariotic protein kinase [Synechocystis sp. PCC 6803]
gi|15214308|sp|P74297|SPKB_SYNY3 Probable
serine/threonine-protein kinase B gi|7428028|pir||S76132
protein kinase pknA (EC 2.7.1.-), 63K - Synechocystis
sp. (strain PCC 6803) gi|1653478|dbj|BAA18391.1|
eukariotic protein kinase [Synechocystis sp. PCC 6803]
gi|11022717|dbj|BAB17034.1| Ser/Thr protein kinase SpkB
[Synechocystis sp. PCC 6803]
Length = 574
Score = 32.3 bits (72), Expect = 4.4
Identities = 15/36 (41%), Positives = 21/36 (57%)
Frame = -3
Query: 489 YSSGPLEDMENRPFSTSSLIGDEVSLPIRHGNRSGP 382
Y G ++ M + PF+T + GDE + IR GN S P
Sbjct: 301 YEDGMMQGMVSTPFTTLTGAGDEPATGIRMGNSSSP 336
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,996,617
Number of Sequences: 1393205
Number of extensions: 10026317
Number of successful extensions: 20507
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20499
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
