Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018366A_C01 KMC018366A_c01
(597 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189269.1| glycosyl hydrolase family 27 (alpha-galactosida... 108 5e-23
dbj|BAB02198.1| contains similarity to alpha galactosidase~gene_... 97 1e-19
dbj|BAB91950.1| B1003B09.4 [Oryza sativa (japonica cultivar-group)] 56 4e-07
ref|NP_242736.1| BH1870~unknown conserved protein in others [Bac... 33 3.6
emb|CAC18254.1| related to blood-brain barrier large neutral ami... 33 3.6
>ref|NP_189269.1| glycosyl hydrolase family 27 (alpha-galactosidase/melibiase);
protein id: At3g26380.1 [Arabidopsis thaliana]
Length = 512
Score = 108 bits (270), Expect = 5e-23
Identities = 54/104 (51%), Positives = 74/104 (70%), Gaps = 4/104 (3%)
Frame = -2
Query: 596 SYSGLCATVEDVKA-DTKPGGVRSWVATGRKGEIYLAFFNLSEQKTVIHAQTSYLAKAIP 420
SYSGLCA + VKA + GVRSW+ATGR+GE+Y+AFFNL+++KT I A+ S +A A+
Sbjct: 406 SYSGLCAVLNPVKAAEASSNGVRSWIATGRRGEVYVAFFNLNQEKTKISAKISDIATALR 465
Query: 419 GRR---FRSCRGKEVWSGKDVVTPQGNLAMNVETHGCALFVLHC 297
G++ SC E+WSGKD + ++++ VE HG ALFVLHC
Sbjct: 466 GKKNLVGASCTSHELWSGKDFGPTKDSVSIQVEPHGPALFVLHC 509
>dbj|BAB02198.1| contains similarity to alpha galactosidase~gene_id:F20C19.10
[Arabidopsis thaliana]
Length = 676
Score = 97.4 bits (241), Expect = 1e-19
Identities = 54/133 (40%), Positives = 74/133 (55%), Gaps = 33/133 (24%)
Frame = -2
Query: 596 SYSGLCATVEDVK------------------------------ADTKPGGVRSWVATGRK 507
SYSGLCA + VK A+ GVRSW+ATGR+
Sbjct: 541 SYSGLCAVLNPVKGLFFSDQLTSPLFSSTYPFLILGIVTHLAAAEASSNGVRSWIATGRR 600
Query: 506 GEIYLAFFNLSEQKTVIHAQTSYLAKAIPGRR---FRSCRGKEVWSGKDVVTPQGNLAMN 336
GE+Y+AFFNL+++KT I A+ S +A A+ G++ SC E+WSGKD + ++++
Sbjct: 601 GEVYVAFFNLNQEKTKISAKISDIATALRGKKNLVGASCTSHELWSGKDFGPTKDSVSIQ 660
Query: 335 VETHGCALFVLHC 297
VE HG ALFVLHC
Sbjct: 661 VEPHGPALFVLHC 673
>dbj|BAB91950.1| B1003B09.4 [Oryza sativa (japonica cultivar-group)]
Length = 640
Score = 55.8 bits (133), Expect = 4e-07
Identities = 36/102 (35%), Positives = 50/102 (48%), Gaps = 2/102 (1%)
Frame = -2
Query: 596 SYSGLCATVEDVKADTKPGGVRSWVATGRKGEIYLAFFNLSEQKTVIHAQTSYLAKAIPG 417
SYS LCATVE + + GEIYLAFFNL I A+ S L K +
Sbjct: 554 SYSRLCATVE---------------SNNKGGEIYLAFFNLDSMSRKITARISDLEKVLGS 598
Query: 416 RRFR--SCRGKEVWSGKDVVTPQGNLAMNVETHGCALFVLHC 297
R +C EVWSG++ + ++ V++HG +F + C
Sbjct: 599 TFIRKDTCSCTEVWSGRNFGRVEEEISAVVKSHGSMVFEITC 640
>ref|NP_242736.1| BH1870~unknown conserved protein in others [Bacillus halodurans]
gi|25490070|pir||F83883 hypothetical protein BH1870
[imported] - Bacillus halodurans (strain C-125)
gi|10174488|dbj|BAB05589.1| BH1870~unknown conserved
protein in others [Bacillus halodurans]
Length = 432
Score = 32.7 bits (73), Expect = 3.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 530 SWVATGRKGEIYLAFFNLSEQKTVI 456
+W A GR GE Y+A FNL +Q+ +
Sbjct: 357 AWAANGRNGEAYVALFNLHDQQKTL 381
>emb|CAC18254.1| related to blood-brain barrier large neutral amino acid transporter
[Neurospora crassa] gi|28922745|gb|EAA31968.1|
hypothetical protein ( (AL451018) related to blood-brain
barrier large neutral amino acid transporter [Neurospora
crassa] )
Length = 622
Score = 32.7 bits (73), Expect = 3.6
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Frame = -1
Query: 378 WQGRCNPAGEFSNERGNSWMCTICSALPLVQLQHLIAEPSIFFIIDHASLLRMGKI*VF* 199
W GEF N G I +A+PLV L +++A + FF++ ++ + V
Sbjct: 338 WDNTNYVVGEFRNP-GRDLPRVIHTAMPLVILSYILANVAYFFVLPLDTINSTNTVAVIF 396
Query: 198 G-------G*VIVVVLVSLLCFSLVYVMIILNERIL 112
G G +I+ ++VS CF + + R++
Sbjct: 397 GSKVFGPVGALILALIVSASCFGALNASTFTSSRLV 432
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,525,677
Number of Sequences: 1393205
Number of extensions: 10883485
Number of successful extensions: 22785
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 22154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22772
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
