Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018364A_C01 KMC018364A_c01
(654 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK40093.1|AF339623_1 cytochrome b [Biorhiza pallida] 35 1.2
gb|AAK40095.1|AF339625_1 cytochrome b [Biorhiza pallida] 33 3.4
gb|AAK40094.1|AF339624_1 cytochrome b [Biorhiza pallida] 33 3.4
gb|AAK40097.1|AF339627_1 cytochrome b [Biorhiza pallida] 33 4.4
gb|AAK40096.1|AF339626_1 cytochrome b [Biorhiza pallida] 33 4.4
>gb|AAK40093.1|AF339623_1 cytochrome b [Biorhiza pallida]
Length = 144
Score = 34.7 bits (78), Expect = 1.2
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = -1
Query: 615 NDVAAWFFMLFDTATPPSIRFFRL-FADDFSLLSDFLLIKTQLLNMHAS-QQQPQGQSSQ 442
ND+ W + F RF+ L F F +L ++I L+ +H + P G +S
Sbjct: 19 NDIVIWLWGGFSVNNATLNRFYSLHFILPFIIL---MMILIHLMTLHLTGSNNPLGTNSN 75
Query: 441 DHKIHYHGFGTLRA*CGFHECLCIQPLGLCLS 346
+KI++H + T++ GF + + L C S
Sbjct: 76 LYKIYFHSYFTIKDIQGFLLMIVMMMLLCCFS 107
>gb|AAK40095.1|AF339625_1 cytochrome b [Biorhiza pallida]
Length = 144
Score = 33.1 bits (74), Expect = 3.4
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = -1
Query: 615 NDVAAWFFMLFDTATPPSIRFFRL-FADDFSLLSDFLLIKTQLLNMHAS-QQQPQGQSSQ 442
N++ W + F RF+ L F F +L ++I L+ +H + P G +S
Sbjct: 19 NEIVIWLWGGFSVNNATLNRFYSLHFILPFIIL---MMILIHLMTLHLTGSNNPLGTNSN 75
Query: 441 DHKIHYHGFGTLRA*CGFHECLCIQPLGLCLS 346
+KI++H + T++ GF + + L C S
Sbjct: 76 LYKIYFHSYFTIKDIQGFLLMIMMMMLLCCFS 107
>gb|AAK40094.1|AF339624_1 cytochrome b [Biorhiza pallida]
Length = 144
Score = 33.1 bits (74), Expect = 3.4
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = -1
Query: 615 NDVAAWFFMLFDTATPPSIRFFRL-FADDFSLLSDFLLIKTQLLNMHAS-QQQPQGQSSQ 442
N++ W + F RF+ L F F +L ++I L+ +H + P G +S
Sbjct: 19 NEIVIWLWGGFSVNNATLNRFYSLHFILPFIIL---MMILIHLMTLHLTGSNNPLGTNSN 75
Query: 441 DHKIHYHGFGTLRA*CGFHECLCIQPLGLCLS 346
+KI++H + T++ GF + + L C S
Sbjct: 76 LYKIYFHSYFTIKDIQGFLLMIMMMMLLCCFS 107
>gb|AAK40097.1|AF339627_1 cytochrome b [Biorhiza pallida]
Length = 144
Score = 32.7 bits (73), Expect = 4.4
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = -1
Query: 615 NDVAAWFFMLFDTATPPSIRFFRL-FADDFSLLSDFLLIKTQLLNMHAS-QQQPQGQSSQ 442
N++ W + F+ RF+ L F F +L ++I L+ +H + P G +S
Sbjct: 19 NNIVIWLWGGFNINNATLNRFYSLHFILPFIIL---MMILIHLMTLHLTGSNNPLGTNSN 75
Query: 441 DHKIHYHGFGTLRA*CGFHECLCIQPLGLCLS 346
+KI++H + T++ GF + + L C S
Sbjct: 76 LYKIYFHSYFTIKDIQGFLLMIVMMMLLCCFS 107
>gb|AAK40096.1|AF339626_1 cytochrome b [Biorhiza pallida]
Length = 144
Score = 32.7 bits (73), Expect = 4.4
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = -1
Query: 615 NDVAAWFFMLFDTATPPSIRFFRL-FADDFSLLSDFLLIKTQLLNMHAS-QQQPQGQSSQ 442
N++ W + F RF+ L F F +L ++I L+ +H + P G +S
Sbjct: 19 NNIVIWLWGGFSVNNATLNRFYSLHFILPFIIL---MMILIHLMTLHLTGSNNPLGTNSN 75
Query: 441 DHKIHYHGFGTLRA*CGFHECLCIQPLGLCLS 346
+KI++H + T++ GF + + L C S
Sbjct: 76 LYKIYFHSYFTIKDIQGFLLMIVMMMLLCCFS 107
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 515,088,898
Number of Sequences: 1393205
Number of extensions: 10548132
Number of successful extensions: 26010
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 25189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25953
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
