Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018363A_C01 KMC018363A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM63512.1| peptidyl-prolyl cis-trans isomerase-like protein ... 114 1e-24
pir||T52622 probable peptidylprolyl isomerase (EC 5.2.1.8) [impo... 113 1e-24
ref|NP_568372.1| peptidyl-prolyl cis-trans isomerase - like prot... 113 1e-24
gb|ZP_00109612.1| hypothetical protein [Nostoc punctiforme] 97 2e-19
ref|NP_680835.1| ORF_ID:tll0044~hypothetical protein [Thermosyne... 94 2e-18
>gb|AAM63512.1| peptidyl-prolyl cis-trans isomerase-like protein [Arabidopsis
thaliana]
Length = 299
Score = 114 bits (284), Expect = 1e-24
Identities = 47/75 (62%), Positives = 63/75 (83%)
Frame = -2
Query: 562 LLGFTVLPLRQFGTWGPEVTTKFDPQKDTYVMCHHGVRSLQVSKWLQSQGFRKVYNVSGG 383
L GF V PLRQFGTW P++T+K +P+KDT+V+C G RS+QV+ WLQSQGF+ VYN++GG
Sbjct: 225 LPGFKVFPLRQFGTWAPDITSKLNPEKDTFVLCKVGGRSMQVANWLQSQGFKSVYNITGG 284
Query: 382 IHAYAVQVDPSVPKY 338
I AY+++VDPS+P Y
Sbjct: 285 IQAYSLKVDPSIPSY 299
>pir||T52622 probable peptidylprolyl isomerase (EC 5.2.1.8) [imported] -
Arabidopsis thaliana gi|2246380|emb|CAB06699.1|
peptidyl-prolyl cis-trans isomerase [Arabidopsis
thaliana]
Length = 221
Score = 113 bits (283), Expect = 1e-24
Identities = 47/75 (62%), Positives = 63/75 (83%)
Frame = -2
Query: 562 LLGFTVLPLRQFGTWGPEVTTKFDPQKDTYVMCHHGVRSLQVSKWLQSQGFRKVYNVSGG 383
L GF V PLRQFGTW P++T+K +P+KDT+V+C G RS+QV+ WLQSQGF+ VYN++GG
Sbjct: 147 LPGFKVFPLRQFGTWAPDITSKLNPEKDTFVLCKVGGRSMQVANWLQSQGFKSVYNITGG 206
Query: 382 IHAYAVQVDPSVPKY 338
I AY+++VDPS+P Y
Sbjct: 207 IQAYSLKVDPSIPTY 221
>ref|NP_568372.1| peptidyl-prolyl cis-trans isomerase - like protein; protein id:
At5g19370.1, supported by cDNA: 25533., supported by
cDNA: gi_13877804, supported by cDNA: gi_16323477
[Arabidopsis thaliana]
gi|13877805|gb|AAK43980.1|AF370165_1 putative
peptidyl-prolyl cis-trans isomerase [Arabidopsis
thaliana] gi|16323478|gb|AAL15233.1| putative
peptidyl-prolyl cis-trans isomerase [Arabidopsis
thaliana]
Length = 299
Score = 113 bits (283), Expect = 1e-24
Identities = 47/75 (62%), Positives = 63/75 (83%)
Frame = -2
Query: 562 LLGFTVLPLRQFGTWGPEVTTKFDPQKDTYVMCHHGVRSLQVSKWLQSQGFRKVYNVSGG 383
L GF V PLRQFGTW P++T+K +P+KDT+V+C G RS+QV+ WLQSQGF+ VYN++GG
Sbjct: 225 LPGFKVFPLRQFGTWAPDITSKLNPEKDTFVLCKVGGRSMQVANWLQSQGFKSVYNITGG 284
Query: 382 IHAYAVQVDPSVPKY 338
I AY+++VDPS+P Y
Sbjct: 285 IQAYSLKVDPSIPTY 299
>gb|ZP_00109612.1| hypothetical protein [Nostoc punctiforme]
Length = 110
Score = 96.7 bits (239), Expect = 2e-19
Identities = 41/73 (56%), Positives = 54/73 (73%)
Frame = -2
Query: 556 GFTVLPLRQFGTWGPEVTTKFDPQKDTYVMCHHGVRSLQVSKWLQSQGFRKVYNVSGGIH 377
GF LPL QF WG E+ T F+PQ +T V+CHHG+RS Q+ +WL +QGF V N+SGGI
Sbjct: 38 GFVNLPLSQFAEWGHEIPTLFNPQAETLVLCHHGIRSAQMCQWLIAQGFTNVQNISGGID 97
Query: 376 AYAVQVDPSVPKY 338
AY++ VD S+P+Y
Sbjct: 98 AYSILVDHSIPQY 110
>ref|NP_680835.1| ORF_ID:tll0044~hypothetical protein [Thermosynechococcus elongatus
BP-1] gi|22293765|dbj|BAC07597.1|
ORF_ID:tll0044~hypothetical protein [Thermosynechococcus
elongatus BP-1]
Length = 111
Score = 93.6 bits (231), Expect = 2e-18
Identities = 40/72 (55%), Positives = 50/72 (68%)
Frame = -2
Query: 553 FTVLPLRQFGTWGPEVTTKFDPQKDTYVMCHHGVRSLQVSKWLQSQGFRKVYNVSGGIHA 374
FT LPL F W P++ FDP ++T V+CHHGVRS Q+ WL QGFR V N+ GGI A
Sbjct: 40 FTPLPLSAFPQWSPQICQLFDPDRETLVLCHHGVRSAQMGHWLIQQGFRNVKNIVGGIDA 99
Query: 373 YAVQVDPSVPKY 338
YA VDP++P+Y
Sbjct: 100 YAAVVDPTLPRY 111
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 513,340,644
Number of Sequences: 1393205
Number of extensions: 11634059
Number of successful extensions: 22216
Number of sequences better than 10.0: 194
Number of HSP's better than 10.0 without gapping: 21640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22211
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
