Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018347A_C01 KMC018347A_c01
(956 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567219.1| putative NifU-like metallocluster assembly fact... 249 6e-65
pir||H85024 hypothetical protein AT4g01940 [imported] - Arabidop... 153 4e-36
gb|AAB88877.1| putative NifU protein [Prunus armeniaca] 132 1e-29
ref|NP_568715.1| Expressed protein; protein id: At5g49940.1, sup... 100 3e-20
dbj|BAA97015.1| gene_id:K9P8.8~pir||T09896~strong similarity to ... 97 5e-19
>ref|NP_567219.1| putative NifU-like metallocluster assembly factor; protein id:
At4g01940.1, supported by cDNA: gi_14517433, supported
by cDNA: gi_15215669, supported by cDNA: gi_20908089
[Arabidopsis thaliana] gi|14517434|gb|AAK62607.1|
AT4g01940/T7B11_20 [Arabidopsis thaliana]
gi|15215670|gb|AAK91380.1| AT4g01940/T7B11_20
[Arabidopsis thaliana] gi|20908090|gb|AAM26728.1|
AT4g01940/T7B11_20 [Arabidopsis thaliana]
gi|28207816|emb|CAD55558.1| NFU1 protein [Arabidopsis
thaliana]
Length = 231
Score = 249 bits (635), Expect = 6e-65
Identities = 126/162 (77%), Positives = 142/162 (86%)
Frame = +3
Query: 144 SSSPSPGLYSAAKIDLTAPNVDLVLEDVRPYLISDGGNVEVVSVENGVISLKLQGACESC 323
+S S GLYSA DLT NVDLVLEDVRP+LISDGGNV+VVSVE+GV+SLKLQGAC SC
Sbjct: 70 ASGVSSGLYSAQTFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSC 129
Query: 324 PSSTTTMKLGIERVLKEKFGDAVKDIVQVYDEEPKETTVEAVNNHLEILRPAIKNFGGSV 503
PSS+TTM +GIERVLKEKFGDA+KDI QV+DEE K+ TVEAVN HL+ILRPAIKN+GGSV
Sbjct: 130 PSSSTTMTMGIERVLKEKFGDALKDIRQVFDEEVKQITVEAVNAHLDILRPAIKNYGGSV 189
Query: 504 QVLSVEGSDCHVDYVGPDSIGSGIKAAIKEKFPDILNVTFTT 629
+VLSVEG DC V YVGP+SIG GI+AAIKEKF DI NVTFT+
Sbjct: 190 EVLSVEGEDCVVKYVGPESIGMGIQAAIKEKFKDISNVTFTS 231
>pir||H85024 hypothetical protein AT4g01940 [imported] - Arabidopsis thaliana
gi|4558563|gb|AAD22656.1|AC007138_20 putative NifU-like
metallocluster assembly factor [Arabidopsis thaliana]
gi|7268578|emb|CAB80687.1| putative NifU-like
metallocluster assembly factor [Arabidopsis thaliana]
Length = 174
Score = 153 bits (386), Expect = 4e-36
Identities = 77/100 (77%), Positives = 87/100 (87%)
Frame = +3
Query: 144 SSSPSPGLYSAAKIDLTAPNVDLVLEDVRPYLISDGGNVEVVSVENGVISLKLQGACESC 323
+S S GLYSA DLT NVDLVLEDVRP+LISDGGNV+VVSVE+GV+SLKLQGAC SC
Sbjct: 69 ASGVSSGLYSAQTFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSC 128
Query: 324 PSSTTTMKLGIERVLKEKFGDAVKDIVQVYDEEPKETTVE 443
PSS+TTM +GIERVLKEKFGDA+KDI QV+DEE K+ TVE
Sbjct: 129 PSSSTTMTMGIERVLKEKFGDALKDIRQVFDEEVKQITVE 168
Score = 32.7 bits (73), Expect = 8.4
Identities = 25/76 (32%), Positives = 39/76 (50%), Gaps = 8/76 (10%)
Frame = +3
Query: 408 VYDEEPKETTVEAVNNHLEILRPAIKNFGGSVQVLSVEGSDCHVDYVG-----PDS---I 563
+Y + + T + V+ LE +RP + + GG+V V+SVE + G P S +
Sbjct: 76 LYSAQTFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTM 135
Query: 564 GSGIKAAIKEKFPDIL 611
GI+ +KEKF D L
Sbjct: 136 TMGIERVLKEKFGDAL 151
>gb|AAB88877.1| putative NifU protein [Prunus armeniaca]
Length = 76
Score = 132 bits (331), Expect = 1e-29
Identities = 64/75 (85%), Positives = 72/75 (95%)
Frame = +3
Query: 186 DLTAPNVDLVLEDVRPYLISDGGNVEVVSVENGVISLKLQGACESCPSSTTTMKLGIERV 365
+LT PNVDLVLEDVRPYLI+DGG+V+VVSVE+GV+SLKLQGAC SCPSSTTTMK+GIERV
Sbjct: 1 ELTVPNVDLVLEDVRPYLIADGGDVDVVSVEDGVVSLKLQGACGSCPSSTTTMKMGIERV 60
Query: 366 LKEKFGDAVKDIVQV 410
LKEKFGDA+KDI QV
Sbjct: 61 LKEKFGDALKDIQQV 75
>ref|NP_568715.1| Expressed protein; protein id: At5g49940.1, supported by cDNA:
gi_13878180, supported by cDNA: gi_16226433, supported
by cDNA: gi_17104538 [Arabidopsis thaliana]
gi|13878181|gb|AAK44168.1|AF370353_1 unknown protein
[Arabidopsis thaliana]
gi|16226434|gb|AAL16167.1|AF428399_1 AT5g49940/K9P8_8
[Arabidopsis thaliana] gi|17104539|gb|AAL34158.1|
unknown protein [Arabidopsis thaliana]
gi|26452324|dbj|BAC43248.1| unknown protein [Arabidopsis
thaliana] gi|28207818|emb|CAD55559.1| NFU2 protein
[Arabidopsis thaliana]
Length = 235
Score = 100 bits (249), Expect = 3e-20
Identities = 61/162 (37%), Positives = 91/162 (55%), Gaps = 5/162 (3%)
Frame = +3
Query: 147 SSPSPGLYSAAKIDLTAPNVDLVLEDVRPYLISDGGNVEVVSVENGVISLKLQGACESCP 326
++P P L ++ LT NV+ VL+++RPYL+SDGGNV + ++ ++ +KLQGAC SCP
Sbjct: 75 ATPDPIL----EVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCP 130
Query: 327 SSTTTMKLGIERVLKEKFGDAVKDIVQVYDEEPKETTVEAVNNHLEILRP-AIKNFGGSV 503
SST TMK+GIER L EK + V +E E E + LE +RP I GS+
Sbjct: 131 SSTMTMKMGIERRLMEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSL 190
Query: 504 QVLSVEGSDCHVDYVGPDSIGSGIKAAI----KEKFPDILNV 617
++ +E + GP + ++ A+ +EK P I V
Sbjct: 191 DLVEIEDPIVKIRITGPAAGVMTVRVAVTQKLREKIPSIAAV 232
>dbj|BAA97015.1| gene_id:K9P8.8~pir||T09896~strong similarity to unknown protein
[Arabidopsis thaliana]
Length = 684
Score = 96.7 bits (239), Expect = 5e-19
Identities = 55/137 (40%), Positives = 80/137 (58%), Gaps = 1/137 (0%)
Frame = +3
Query: 147 SSPSPGLYSAAKIDLTAPNVDLVLEDVRPYLISDGGNVEVVSVENGVISLKLQGACESCP 326
++P P L ++ LT NV+ VL+++RPYL+SDGGNV + ++ ++ +KLQGAC SCP
Sbjct: 75 ATPDPIL----EVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCP 130
Query: 327 SSTTTMKLGIERVLKEKFGDAVKDIVQVYDEEPKETTVEAVNNHLEILRP-AIKNFGGSV 503
SST TMK+GIER L EK + V +E E E + LE +RP I GS+
Sbjct: 131 SSTMTMKMGIERRLMEKIPEIVAVEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSL 190
Query: 504 QVLSVEGSDCHVDYVGP 554
++ +E + GP
Sbjct: 191 DLVEIEDPIVKIRITGP 207
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 806,358,550
Number of Sequences: 1393205
Number of extensions: 18076404
Number of successful extensions: 68512
Number of sequences better than 10.0: 251
Number of HSP's better than 10.0 without gapping: 57859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66471
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 54078381240
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
