Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018334A_C01 KMC018334A_c01
(570 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL58957.1|AC091811_6 putative arginine-rich protein [Oryza s... 106 2e-22
ref|NP_568522.1| RRM-containing protein; protein id: At5g32450.1... 101 7e-21
ref|NP_567536.1| RRM-containing protein; protein id: At4g17720.1... 51 1e-05
pir||C71447 hypothetical protein - Arabidopsis thaliana gi|22451... 51 1e-05
dbj|BAA93036.1| ESTs D15336(C0474),C98053(C0474) correspond to a... 50 3e-05
>gb|AAL58957.1|AC091811_6 putative arginine-rich protein [Oryza sativa]
Length = 278
Score = 106 bits (264), Expect = 2e-22
Identities = 53/64 (82%), Positives = 57/64 (88%)
Frame = -2
Query: 569 AAERKLNDTGSAVKTSRYVTAGTSWLNGAFSKVAKVGHVASTRTREKFNMAVSNLTAKDS 390
AAERKLNDTGSAVKT+RYV+AGTSWLNGAFSKVAK GHVA +RTREKF +AVSNLTAK
Sbjct: 215 AAERKLNDTGSAVKTNRYVSAGTSWLNGAFSKVAKAGHVAGSRTREKFQIAVSNLTAKGP 274
Query: 389 PVAA 378
V A
Sbjct: 275 AVVA 278
>ref|NP_568522.1| RRM-containing protein; protein id: At5g32450.1, supported by cDNA:
5850. [Arabidopsis thaliana] gi|21593919|gb|AAM65884.1|
unknown [Arabidopsis thaliana]
gi|26450493|dbj|BAC42360.1| unknown protein [Arabidopsis
thaliana] gi|28973403|gb|AAO64026.1| putative
RRM-containing protein [Arabidopsis thaliana]
Length = 267
Score = 101 bits (251), Expect = 7e-21
Identities = 46/63 (73%), Positives = 59/63 (93%)
Frame = -2
Query: 569 AAERKLNDTGSAVKTSRYVTAGTSWLNGAFSKVAKVGHVASTRTREKFNMAVSNLTAKDS 390
AAERKLNDTGSAVK+SRYVTAG +W +GAFSKVA+VG VA ++T+EKFN+AVSN+++KD+
Sbjct: 204 AAERKLNDTGSAVKSSRYVTAGAAWFSGAFSKVARVGQVAGSKTKEKFNLAVSNMSSKDT 263
Query: 389 PVA 381
P+A
Sbjct: 264 PIA 266
>ref|NP_567536.1| RRM-containing protein; protein id: At4g17720.1, supported by cDNA:
39922. [Arabidopsis thaliana] gi|21593540|gb|AAM65507.1|
putative splicing regulatory protein [Arabidopsis
thaliana] gi|28393291|gb|AAO42073.1| putative
RRM-containing protein [Arabidopsis thaliana]
gi|28827694|gb|AAO50691.1| putative RRM-containing
protein [Arabidopsis thaliana]
Length = 313
Score = 50.8 bits (120), Expect = 1e-05
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = -2
Query: 569 AAERKLNDTGSAVKTSRYVTAGTSWLNGAFSKVAKVGHVASTRTREKFNMA 417
AAE+ +++ GSA+ +RYV G +W+ GAF+KVAK + +EK MA
Sbjct: 190 AAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAAEEVGQKAKEKVGMA 240
>pir||C71447 hypothetical protein - Arabidopsis thaliana
gi|2245131|emb|CAB10552.1| hypothetical protein
[Arabidopsis thaliana] gi|7268525|emb|CAB78775.1|
hypothetical protein [Arabidopsis thaliana]
Length = 321
Score = 50.8 bits (120), Expect = 1e-05
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = -2
Query: 569 AAERKLNDTGSAVKTSRYVTAGTSWLNGAFSKVAKVGHVASTRTREKFNMA 417
AAE+ +++ GSA+ +RYV G +W+ GAF+KVAK + +EK MA
Sbjct: 198 AAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAAEEVGQKAKEKVGMA 248
>dbj|BAA93036.1| ESTs D15336(C0474),C98053(C0474) correspond to a region of the
predicted gene.~Similar to Arabidopsis thaliana DNA
chromosome 4, ESSA I contig fragment No. 9; hypothetical
protein. (Z97344) [Oryza sativa (japonica
cultivar-group)]
Length = 306
Score = 49.7 bits (117), Expect = 3e-05
Identities = 23/47 (48%), Positives = 31/47 (65%)
Frame = -2
Query: 569 AAERKLNDTGSAVKTSRYVTAGTSWLNGAFSKVAKVGHVASTRTREK 429
AAE+K++ GSA+ +RYV G SW+ AF+KVAK T T+EK
Sbjct: 238 AAEQKVSTAGSAIMKNRYVFTGASWVTNAFNKVAKAATDVGTMTKEK 284
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,026,265
Number of Sequences: 1393205
Number of extensions: 9060698
Number of successful extensions: 21743
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 21140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21722
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
