Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018311A_C01 KMC018311A_c01
(551 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9SUC0|D3HI_ARATH Probable 3-hydroxyisobutyrate dehydrogenase... 125 3e-28
gb|AAM63893.1| 3-hydroxyisobutyrate dehydrogenase-like protein [... 125 3e-28
ref|NP_567617.1| 3-hydroxyisobutyrate dehydrogenase -like protei... 125 3e-28
pir||T10635 3-hydroxyisobutyrate dehydrogenase homolog T13K14.90... 125 3e-28
ref|XP_216150.1| 3-hydroxyisobutyrate dehydrogenase [Rattus norv... 72 3e-12
>sp|Q9SUC0|D3HI_ARATH Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial
precursor (HIBADH)
Length = 337
Score = 125 bits (315), Expect = 3e-28
Identities = 65/108 (60%), Positives = 78/108 (72%), Gaps = 3/108 (2%)
Frame = -2
Query: 550 GVSPSTLTKVFNWLPVLAVGVVMLT---TPVPGLMEGVPSSRDYNGGFASKLMAKDLNLA 380
G+S STLT+V N + G + PVPG+M+GVPSSRDYNGGFASKLMAKDLNLA
Sbjct: 234 GISASTLTEVLN----TSSGRCWSSDAYNPVPGVMKGVPSSRDYNGGFASKLMAKDLNLA 289
Query: 379 VESAELAGCKYPLTSEAQKIYTELCNGAHEAKDFSCAFRHYYSGTDEI 236
SAE G K PL S+AQ+IY ++C HE KDFSC FRH+Y+G DE+
Sbjct: 290 AASAEEVGHKSPLISKAQEIYKKMCEEGHETKDFSCVFRHFYNGKDEV 337
>gb|AAM63893.1| 3-hydroxyisobutyrate dehydrogenase-like protein [Arabidopsis
thaliana]
Length = 347
Score = 125 bits (315), Expect = 3e-28
Identities = 65/108 (60%), Positives = 78/108 (72%), Gaps = 3/108 (2%)
Frame = -2
Query: 550 GVSPSTLTKVFNWLPVLAVGVVMLT---TPVPGLMEGVPSSRDYNGGFASKLMAKDLNLA 380
G+S STLT+V N + G + PVPG+M+GVPSSRDYNGGFASKLMAKDLNLA
Sbjct: 244 GISASTLTEVLN----TSSGRCWSSDAYNPVPGVMKGVPSSRDYNGGFASKLMAKDLNLA 299
Query: 379 VESAELAGCKYPLTSEAQKIYTELCNGAHEAKDFSCAFRHYYSGTDEI 236
SAE G K PL S+AQ+IY ++C HE KDFSC FRH+Y+G DE+
Sbjct: 300 AASAEEVGHKSPLISKAQEIYKKMCEEGHETKDFSCVFRHFYNGKDEV 347
>ref|NP_567617.1| 3-hydroxyisobutyrate dehydrogenase -like protein; protein id:
At4g20930.1, supported by cDNA: 28479. [Arabidopsis
thaliana]
Length = 347
Score = 125 bits (315), Expect = 3e-28
Identities = 65/108 (60%), Positives = 78/108 (72%), Gaps = 3/108 (2%)
Frame = -2
Query: 550 GVSPSTLTKVFNWLPVLAVGVVMLT---TPVPGLMEGVPSSRDYNGGFASKLMAKDLNLA 380
G+S STLT+V N + G + PVPG+M+GVPSSRDYNGGFASKLMAKDLNLA
Sbjct: 244 GISASTLTEVLN----TSSGRCWSSDAYNPVPGVMKGVPSSRDYNGGFASKLMAKDLNLA 299
Query: 379 VESAELAGCKYPLTSEAQKIYTELCNGAHEAKDFSCAFRHYYSGTDEI 236
SAE G K PL S+AQ+IY ++C HE KDFSC FRH+Y+G DE+
Sbjct: 300 AASAEEVGHKSPLISKAQEIYKKMCEEGHETKDFSCVFRHFYNGKDEV 347
>pir||T10635 3-hydroxyisobutyrate dehydrogenase homolog T13K14.90 - Arabidopsis
thaliana gi|5262783|emb|CAB45888.1| 3-hydroxyisobutyrate
dehydrogenase-like protein [Arabidopsis thaliana]
gi|7268890|emb|CAB79093.1| 3-hydroxyisobutyrate
dehydrogenase-like protein [Arabidopsis thaliana]
Length = 371
Score = 125 bits (315), Expect = 3e-28
Identities = 65/108 (60%), Positives = 78/108 (72%), Gaps = 3/108 (2%)
Frame = -2
Query: 550 GVSPSTLTKVFNWLPVLAVGVVMLT---TPVPGLMEGVPSSRDYNGGFASKLMAKDLNLA 380
G+S STLT+V N + G + PVPG+M+GVPSSRDYNGGFASKLMAKDLNLA
Sbjct: 268 GISASTLTEVLN----TSSGRCWSSDAYNPVPGVMKGVPSSRDYNGGFASKLMAKDLNLA 323
Query: 379 VESAELAGCKYPLTSEAQKIYTELCNGAHEAKDFSCAFRHYYSGTDEI 236
SAE G K PL S+AQ+IY ++C HE KDFSC FRH+Y+G DE+
Sbjct: 324 AASAEEVGHKSPLISKAQEIYKKMCEEGHETKDFSCVFRHFYNGKDEV 371
>ref|XP_216150.1| 3-hydroxyisobutyrate dehydrogenase [Rattus norvegicus]
gi|12585554|sp|P29266|D3HI_RAT 3-hydroxyisobutyrate
dehydrogenase, mitochondrial precursor (HIBADH)
Length = 335
Score = 72.4 bits (176), Expect = 3e-12
Identities = 41/100 (41%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Frame = -2
Query: 550 GVSPSTLTKVFNWLPVLAVGVVMLT---TPVPGLMEGVPSSRDYNGGFASKLMAKDLNLA 380
G+ P L K+ N ++ G + PVPG+M+GVPSS +Y GGF + LMAKDL LA
Sbjct: 233 GLDPKLLAKILN----MSSGRCWSSDTYNPVPGVMDGVPSSNNYQGGFGTTLMAKDLGLA 288
Query: 379 VESAELAGCKYPLTSEAQKIYTELCNGAHEAKDFSCAFRH 260
+SA L S A +IY +C+ + KDFS F++
Sbjct: 289 QDSATSTKTPILLGSVAHQIYRMMCSKGYSKKDFSSVFQY 328
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,644,602
Number of Sequences: 1393205
Number of extensions: 10434177
Number of successful extensions: 30841
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 29349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30773
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
