Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018303A_C01 KMC018303A_c01
(393 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565663.1| putative carboxypeptidase; protein id: At2g2792... 47 4e-05
gb|AAG24793.1|AF272362_1 neuromedin U receptor 1 [Homo sapiens] 33 0.86
ref|NP_006047.2| G protein-coupled receptor 66 [Homo sapiens] gi... 33 0.86
gb|AAC02680.1| orphan G protein-coupled receptor; GPC-R [Homo sa... 33 0.86
emb|CAA70930.1| Hyp1 protein [Hydra vulgaris] 30 5.6
>ref|NP_565663.1| putative carboxypeptidase; protein id: At2g27920.1, supported by
cDNA: gi_15724217 [Arabidopsis thaliana]
gi|15724218|gb|AAL06502.1|AF412049_1 At2g27920/T1E2.16
[Arabidopsis thaliana] gi|20197951|gb|AAD21510.2|
putative carboxypeptidase [Arabidopsis thaliana]
gi|27764970|gb|AAO23606.1| At2g27920/T1E2.16
[Arabidopsis thaliana]
Length = 461
Score = 47.4 bits (111), Expect = 4e-05
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = -2
Query: 392 GAGHFVPTDQPCVALDMVGAITQSP 318
GAGHFVP D+PCVAL MVG IT+SP
Sbjct: 435 GAGHFVPVDEPCVALKMVGEITKSP 459
>gb|AAG24793.1|AF272362_1 neuromedin U receptor 1 [Homo sapiens]
Length = 426
Score = 33.1 bits (74), Expect = 0.86
Identities = 17/46 (36%), Positives = 27/46 (57%)
Frame = -1
Query: 252 ERALIVGQAKGESTSKSWNRINHRKQQ*TLGRERATLMLFMAYQIF 115
ER L++ +AKG ++ + +R R QQ GR + T MLF+ +F
Sbjct: 261 ERLLLMQEAKGRGSAAARSRYTCRLQQHDRGRRQVTKMLFVLVVVF 306
>ref|NP_006047.2| G protein-coupled receptor 66 [Homo sapiens]
gi|22328109|gb|AAH36543.1| G protein-coupled receptor 66
[Homo sapiens]
Length = 426
Score = 33.1 bits (74), Expect = 0.86
Identities = 17/46 (36%), Positives = 27/46 (57%)
Frame = -1
Query: 252 ERALIVGQAKGESTSKSWNRINHRKQQ*TLGRERATLMLFMAYQIF 115
ER L++ +AKG ++ + +R R QQ GR + T MLF+ +F
Sbjct: 261 ERLLLMQEAKGRGSAAARSRYTCRLQQHDRGRRQVTKMLFVLVVVF 306
>gb|AAC02680.1| orphan G protein-coupled receptor; GPC-R [Homo sapiens]
Length = 403
Score = 33.1 bits (74), Expect = 0.86
Identities = 17/46 (36%), Positives = 27/46 (57%)
Frame = -1
Query: 252 ERALIVGQAKGESTSKSWNRINHRKQQ*TLGRERATLMLFMAYQIF 115
ER L++ +AKG ++ + +R R QQ GR + T MLF+ +F
Sbjct: 238 ERLLLMQEAKGRGSAAARSRYTCRLQQHDRGRRQVTKMLFVLVVVF 283
>emb|CAA70930.1| Hyp1 protein [Hydra vulgaris]
Length = 360
Score = 30.4 bits (67), Expect = 5.6
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Frame = +1
Query: 55 PNLQEKLLVIMTW----EKNDIVKKNLISHK*HQCSSLPSKSLLLFSVIDPVPAFAC*LT 222
PN++ LL I+TW E N + + + K C L L++F++ + + +T
Sbjct: 47 PNIKHNLLQIITWNINSENNQTEEADWENSKKELCEYLKKLDLMIFAMQELTESQLKFMT 106
Query: 223 LCLTNNQCSFV*ADFIL*VNS--NFLFYVQLH 312
LCL + S+V + NS N +FY + H
Sbjct: 107 LCLPH--YSYVEPEKKRSTNSRLNSIFYKRTH 136
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 312,626,992
Number of Sequences: 1393205
Number of extensions: 5759297
Number of successful extensions: 10323
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 10176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10321
length of database: 448,689,247
effective HSP length: 106
effective length of database: 301,009,517
effective search space used: 7224228408
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
