Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018272A_C01 KMC018272A_c01
(501 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA63107.1| ribosomal protein L23 [Spinacia oleracea] 188 3e-47
emb|CAA63112.1| ribosomal protein L23 [Spinacia oleracea] 186 1e-46
sp|O22644|RL2B_FRIAG 60S RIBOSOMAL PROTEIN L23A gi|2641201|gb|AA... 185 2e-46
gb|AAM64290.1| 60S ribosomal protein L23A [Arabidopsis thaliana] 184 4e-46
ref|NP_181478.1| 60S ribosomal protein L23A; protein id: At2g394... 184 4e-46
>emb|CAA63107.1| ribosomal protein L23 [Spinacia oleracea]
Length = 155
Score = 188 bits (478), Expect = 3e-47
Identities = 95/96 (98%), Positives = 95/96 (98%)
Frame = -3
Query: 499 PRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQ 320
PRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQ
Sbjct: 60 PRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQ 119
Query: 319 AKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212
AKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 120 AKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 155
>emb|CAA63112.1| ribosomal protein L23 [Spinacia oleracea]
Length = 155
Score = 186 bits (472), Expect = 1e-46
Identities = 93/96 (96%), Positives = 95/96 (98%)
Frame = -3
Query: 499 PRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQ 320
PRISATPRNKLDHYQILK+PLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQ
Sbjct: 60 PRISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQ 119
Query: 319 AKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212
+KKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 120 SKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 155
>sp|O22644|RL2B_FRIAG 60S RIBOSOMAL PROTEIN L23A gi|2641201|gb|AAB86852.1| ribosomal
protein L23a [Fritillaria agrestis]
Length = 154
Score = 185 bits (470), Expect = 2e-46
Identities = 92/96 (95%), Positives = 94/96 (97%)
Frame = -3
Query: 499 PRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQ 320
PRISA PRNKLDHYQILK+PLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQ
Sbjct: 59 PRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQ 118
Query: 319 AKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212
KKVNTLIRPDGTKKAYVRLTPDYDALD+ANKIGII
Sbjct: 119 TKKVNTLIRPDGTKKAYVRLTPDYDALDIANKIGII 154
>gb|AAM64290.1| 60S ribosomal protein L23A [Arabidopsis thaliana]
Length = 154
Score = 184 bits (468), Expect = 4e-46
Identities = 92/96 (95%), Positives = 94/96 (97%)
Frame = -3
Query: 499 PRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQ 320
P+ISATPRNKLDHYQILK+PLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQ
Sbjct: 59 PKISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQ 118
Query: 319 AKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212
KKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 119 TKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
>ref|NP_181478.1| 60S ribosomal protein L23A; protein id: At2g39460.1, supported by
cDNA: 22479., supported by cDNA: gi_13358241, supported
by cDNA: gi_14335111, supported by cDNA: gi_14532451,
supported by cDNA: gi_16974522, supported by cDNA:
gi_2654121 [Arabidopsis thaliana] gi|7441024|pir||T00556
60S ribosomal protein L23A [imported] - Arabidopsis
thaliana gi|3355475|gb|AAC27837.1| 60S ribosomal protein
L23A [Arabidopsis thaliana]
gi|11762271|gb|AAG40408.1|AF325056_1 At2g39460
[Arabidopsis thaliana] gi|14335112|gb|AAK59835.1|
At2g39460/F12L6.12 [Arabidopsis thaliana]
gi|14532452|gb|AAK63954.1| At2g39460/F12L6.12
[Arabidopsis thaliana] gi|16974523|gb|AAL31171.1|
At2g39460/F12L6.12 [Arabidopsis thaliana]
Length = 154
Score = 184 bits (468), Expect = 4e-46
Identities = 92/96 (95%), Positives = 94/96 (97%)
Frame = -3
Query: 499 PRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQ 320
P+ISATPRNKLDHYQILK+PLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQ
Sbjct: 59 PKISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQ 118
Query: 319 AKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 212
KKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 119 TKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 378,773,120
Number of Sequences: 1393205
Number of extensions: 7437116
Number of successful extensions: 16566
Number of sequences better than 10.0: 287
Number of HSP's better than 10.0 without gapping: 16120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16508
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
