Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018270A_C01 KMC018270A_c01
(919 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178234.1| putative ribosomal protein L7; protein id: At2g... 383 e-105
prf||1909359B ribosomal protein L7 382 e-105
ref|NP_187967.1| ribosomal protein, putative; protein id: At3g13... 377 e-103
ref|NP_671959.1| 60S ribosomal protein L7; protein id: At2g44120... 377 e-103
ref|NP_181940.2| 60S ribosomal protein L7; protein id: At2g44120... 375 e-103
>ref|NP_178234.1| putative ribosomal protein L7; protein id: At2g01250.1, supported
by cDNA: 13298., supported by cDNA: gi_13877566,
supported by cDNA: gi_15028382, supported by cDNA:
gi_19310656, supported by cDNA: gi_20148738 [Arabidopsis
thaliana] gi|25295066|pir||D84422 60S ribosomal protein
L7 [imported] - Arabidopsis thaliana
gi|4262232|gb|AAD14525.1| putative ribosomal protein L7
[Arabidopsis thaliana]
gi|13877567|gb|AAK43861.1|AF370484_1 60S ribosomal
protein L7 [Arabidopsis thaliana]
gi|15028383|gb|AAK76668.1| putative ribosomal protein L7
[Arabidopsis thaliana] gi|19310657|gb|AAL85059.1|
putative ribosomal protein L7 [Arabidopsis thaliana]
gi|20148739|gb|AAM10260.1| 60S ribosomal protein L7
[Arabidopsis thaliana] gi|21537351|gb|AAM61692.1|
putative ribosomal protein L7 [Arabidopsis thaliana]
Length = 242
Score = 383 bits (983), Expect = e-105
Identities = 185/235 (78%), Positives = 213/235 (89%)
Frame = +3
Query: 57 VPESV*RSRRGTRNGHWQRSSNCEAAKKKRAVSRKLIWSRAQQYAKEYDEQQKELVRLKR 236
VPESV + R+ ++ N EAAKKK A +RKLI+ RA+QY+KEY E++KEL+ LKR
Sbjct: 8 VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEKEKELISLKR 67
Query: 237 EAKLKGGFYVNPEAKLLFIVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATVNML 416
EAKLKGGFYV+PEAKLLFI+RIRGINA+ PKT+KILQLLRLRQIFNGVFLKVNKAT+NML
Sbjct: 68 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNML 127
Query: 417 QRVEPYVTYGYPNLKSLRELIYKRGYGKVNKQRMALTDNSVIEQTLGKHGIICIEDLIHE 596
+RVEPYVTYG+PNLKS++ELIYKRGYGK+N QR+ALTDNS++EQ LGKHGIIC EDLIHE
Sbjct: 128 RRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIHE 187
Query: 597 ILTVGPHFREANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGXREDYINELIRRMN 761
ILTVGPHF+EANNFLWPF+LKAPLGGLKKKRNHYVEGGDAG RE++INELIRRMN
Sbjct: 188 ILTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELIRRMN 242
>prf||1909359B ribosomal protein L7
Length = 242
Score = 382 bits (981), Expect = e-105
Identities = 187/237 (78%), Positives = 214/237 (89%), Gaps = 2/237 (0%)
Frame = +3
Query: 57 VPESV*RSRRGTRNGHWQ--RSSNCEAAKKKRAVSRKLIWSRAQQYAKEYDEQQKELVRL 230
VPESV + ++ RN W + AKKK +RKLI++RA+QYAKEY EQ+KEL+RL
Sbjct: 8 VPESVLKKQK--RNEEWALVKKQELAVAKKKSVENRKLIYNRAKQYAKEYSEQEKELIRL 65
Query: 231 KREAKLKGGFYVNPEAKLLFIVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATVN 410
KREA+LKGGFYV+PEAKLLFI+RIRGINAM P+T+KILQLLRLRQIFNGVFLKVNKATVN
Sbjct: 66 KREARLKGGFYVDPEAKLLFIIRIRGINAMPPQTKKILQLLRLRQIFNGVFLKVNKATVN 125
Query: 411 MLQRVEPYVTYGYPNLKSLRELIYKRGYGKVNKQRMALTDNSVIEQTLGKHGIICIEDLI 590
ML RVEPYVTYGYPNLKS++ELIYKRGYGKV+KQR+ALTDN+V+EQ LGKHGIICIEDL+
Sbjct: 126 MLHRVEPYVTYGYPNLKSIKELIYKRGYGKVDKQRIALTDNAVVEQVLGKHGIICIEDLV 185
Query: 591 HEILTVGPHFREANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGXREDYINELIRRMN 761
HEI+TVGPHF+EANNFLWPF+LKAPLGGLKKKRNHYVEGGDAG RE++INELIRRMN
Sbjct: 186 HEIITVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELIRRMN 242
>ref|NP_187967.1| ribosomal protein, putative; protein id: At3g13580.1, supported by
cDNA: gi_14532551, supported by cDNA: gi_15810195,
supported by cDNA: gi_18655394 [Arabidopsis thaliana]
gi|11994560|dbj|BAB02600.1| 60S ribosomal protein L7
[Arabidopsis thaliana] gi|14532552|gb|AAK64004.1|
AT3g13580/K20M4_2 [Arabidopsis thaliana]
gi|15810196|gb|AAL06999.1| AT3g13580/K20M4_2
[Arabidopsis thaliana] gi|18655395|gb|AAL76153.1|
AT3g13580/K20M4_2 [Arabidopsis thaliana]
Length = 244
Score = 377 bits (967), Expect = e-103
Identities = 179/239 (74%), Positives = 215/239 (89%)
Frame = +3
Query: 45 SESGVPESV*RSRRGTRNGHWQRSSNCEAAKKKRAVSRKLIWSRAQQYAKEYDEQQKELV 224
S++ VPESV + R+ + EAAKK+ A RKLI++RA+QY+KEY E+++EL+
Sbjct: 6 SKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEKERELI 65
Query: 225 RLKREAKLKGGFYVNPEAKLLFIVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKAT 404
+LKREAKLKGGFYV+PEAKLLFI+RIRGINA+ PKT+KILQLLRLRQIFNGVFLKVNKAT
Sbjct: 66 QLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKAT 125
Query: 405 VNMLQRVEPYVTYGYPNLKSLRELIYKRGYGKVNKQRMALTDNSVIEQTLGKHGIICIED 584
+NML+RVEPYVTYGYPNLKS++ELIYKRG+GK+N QR ALTDNS+++Q LGKHGIIC+ED
Sbjct: 126 INMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVED 185
Query: 585 LIHEILTVGPHFREANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGXREDYINELIRRMN 761
LIHEI+TVGPHF+EANNFLWPF+LKAPLGG+KKKRNHYVEGGDAG RE++INEL+RRMN
Sbjct: 186 LIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRRMN 244
>ref|NP_671959.1| 60S ribosomal protein L7; protein id: At2g44120.2, supported by
cDNA: 36813. [Arabidopsis thaliana]
gi|6174958|sp|Q42208|RL7_ARATH 60S ribosomal protein L7
gi|7440720|pir||T00692 60S ribosomal protein L7
[imported] - Arabidopsis thaliana
gi|3212879|gb|AAC23430.1| 60S ribosomal protein L7
[Arabidopsis thaliana]
Length = 247
Score = 377 bits (967), Expect = e-103
Identities = 183/244 (75%), Positives = 212/244 (86%)
Frame = +3
Query: 30 GQQRGSESGVPESV*RSRRGTRNGHWQRSSNCEAAKKKRAVSRKLIWSRAQQYAKEYDEQ 209
G+ S+ VPESV + + + AAKKK +RKLI+ RA+QYAKEY E+
Sbjct: 4 GEMAESKVVVPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEK 63
Query: 210 QKELVRLKREAKLKGGFYVNPEAKLLFIVRIRGINAMHPKTRKILQLLRLRQIFNGVFLK 389
EL+RLKREAKLKGGFYV+PEAKLLFI+RIRGINA+ PKT+KILQLLRLRQIFNGVFLK
Sbjct: 64 DNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLK 123
Query: 390 VNKATVNMLQRVEPYVTYGYPNLKSLRELIYKRGYGKVNKQRMALTDNSVIEQTLGKHGI 569
VNKATVNML+RVEPYVTYGYPNLKS++ELIYKRGYGK+N QR+ALTDNS+++Q LGKHGI
Sbjct: 124 VNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGI 183
Query: 570 ICIEDLIHEILTVGPHFREANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGXREDYINELI 749
IC+EDLIHEI+TVGPHF+EANNFLWPF+LKAPLGGLKKKRNHYVEGGDAG RE++INEL+
Sbjct: 184 ICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELV 243
Query: 750 RRMN 761
RRMN
Sbjct: 244 RRMN 247
>ref|NP_181940.2| 60S ribosomal protein L7; protein id: At2g44120.1, supported by
cDNA: gi_15450712, supported by cDNA: gi_17386141,
supported by cDNA: gi_17473919, supported by cDNA:
gi_20148290 [Arabidopsis thaliana]
gi|15450713|gb|AAK96628.1| At2g44120/F6E13.25
[Arabidopsis thaliana]
gi|17386142|gb|AAL38617.1|AF446884_1 At2g44120/F6E13.25
[Arabidopsis thaliana] gi|17473920|gb|AAL38372.1| 60S
ribosomal protein L7 [Arabidopsis thaliana]
gi|20148291|gb|AAM10036.1| 60S ribosomal protein L7
[Arabidopsis thaliana] gi|21593176|gb|AAM65125.1| 60S
ribosomal protein L7 [Arabidopsis thaliana]
Length = 242
Score = 375 bits (962), Expect = e-103
Identities = 181/235 (77%), Positives = 208/235 (88%)
Frame = +3
Query: 57 VPESV*RSRRGTRNGHWQRSSNCEAAKKKRAVSRKLIWSRAQQYAKEYDEQQKELVRLKR 236
VPESV + + + AAKKK +RKLI+ RA+QYAKEY E+ EL+RLKR
Sbjct: 8 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKR 67
Query: 237 EAKLKGGFYVNPEAKLLFIVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATVNML 416
EAKLKGGFYV+PEAKLLFI+RIRGINA+ PKT+KILQLLRLRQIFNGVFLKVNKATVNML
Sbjct: 68 EAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNML 127
Query: 417 QRVEPYVTYGYPNLKSLRELIYKRGYGKVNKQRMALTDNSVIEQTLGKHGIICIEDLIHE 596
+RVEPYVTYGYPNLKS++ELIYKRGYGK+N QR+ALTDNS+++Q LGKHGIIC+EDLIHE
Sbjct: 128 RRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHE 187
Query: 597 ILTVGPHFREANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGXREDYINELIRRMN 761
I+TVGPHF+EANNFLWPF+LKAPLGGLKKKRNHYVEGGDAG RE++INEL+RRMN
Sbjct: 188 IMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELVRRMN 242
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 738,621,789
Number of Sequences: 1393205
Number of extensions: 15664068
Number of successful extensions: 46406
Number of sequences better than 10.0: 204
Number of HSP's better than 10.0 without gapping: 44020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46257
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 50473155824
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
