>KMC018265A_C01 KMC018265A_c01
agtctgaaatattCTCAAAAGTACTCATTATAATGTTCACAAATCACAACATGGTGCAAA
TCCATATTACACAATCTAGATTTCACATTATTCTCATACATGGATTCTATACATTTCCGT
TTCACACCTAGAGTCCCCATCCTCATAGAGGATTTAATGAATCCATTCGACCAAGTGCAC
CACCCTGTGTTGAGTCTAAATGTCTAATATACAAGATTTATGTAAGGAACAAATTAGTGA
AATGTGACCATTACCCAAATTTGGATTTCAGTTTTGATAATTTTCCTACATTACAGAGAC
TACAAATTGTGACTCAATAAATAGATTGTCCTGTATCTAGTTCCAACATGATCAAAATTT
TACAAAATTGTCAGATTTGGCATTATAAAACCTGTCAAATTCATCTTGAATCTGTTGAGC
AAGATCCAATTCCCCGAAAT

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC018265A_C01 KMC018265A_c01
         (440 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB91454.1| phosphoribosyltransferase [Cryptomeria japonica]       27  5.0
ref|NP_326103.1| ATP SYNTHASE A CHAIN [Mycoplasma pulmonis] gi|2...    30  5.2
emb|CAD34006.1| polyprotein [Deformed wing virus]                      30  5.2
dbj|BAC34553.1| unnamed protein product [Mus musculus]                 30  8.8
pir||S33293 testican - human                                           30  8.8

>dbj|BAB91454.1| phosphoribosyltransferase [Cryptomeria japonica]
          Length = 191

 Score = 26.9 bits (58), Expect(2) = 5.0
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +1

Query: 85  TLFSYMDSI---HFRFTPRVPILIEDLMNPFDQVHHPVL 192
           T+F YM  I   HFRF PR P  ++  ++  D VH   L
Sbjct: 38  TIFLYMFLIGIWHFRFRPRHPPHMDTRISHADAVHQDEL 76

 Score = 22.3 bits (46), Expect(2) = 5.0
 Identities = 9/21 (42%), Positives = 11/21 (51%)
 Frame = +3

Query: 249 HYPNLDFSFDNFPTLQRLQIV 311
           H   LD  FD FPT +   +V
Sbjct: 72  HQDELDEEFDTFPTSKSSDVV 92

>ref|NP_326103.1| ATP SYNTHASE A CHAIN [Mycoplasma pulmonis] gi|25394109|pir||H90545
           atp synthase a chain [imported] - Mycoplasma pulmonis
           (strain UAB CTIP) gi|14089685|emb|CAC13445.1| ATP
           SYNTHASE A CHAIN [Mycoplasma pulmonis]
          Length = 270

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +1

Query: 76  LDFTLFSYMDSIHFRFTPRVPILIEDLMNPFDQVHH--PVLSLNV 204
           L   L S++    F+F  R   +I D++NP D + H  P+LSL+V
Sbjct: 122 LTLALISWIGITVFKFANRKVKIIFDIINPLDLIGHFIPLLSLSV 166

>emb|CAD34006.1| polyprotein [Deformed wing virus]
          Length = 2890

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 27   IIMFTNHNMVQIHITQSRFHIILIHGFYTFPFH 125
            ++ F N+N   I I     + +++ G YT+P+H
Sbjct: 2267 LLAFENNNKTPISINADGLYEVILQGVYTYPYH 2299

>dbj|BAC34553.1| unnamed protein product [Mus musculus]
          Length = 439

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 10/29 (34%), Positives = 21/29 (71%)
 Frame = +3

Query: 138 HPHRGFNESIRPSAPPCVESKCLIYKIYV 224
           +P++ F++++ PS  PC++ KC  +K+ V
Sbjct: 70  NPNKPFDQALDPSKDPCLKVKCSPHKVCV 98

>pir||S33293 testican - human
          Length = 439

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 10/29 (34%), Positives = 21/29 (71%)
 Frame = +3

Query: 138 HPHRGFNESIRPSAPPCVESKCLIYKIYV 224
           +P++ F++++ PS  PC++ KC  +K+ V
Sbjct: 70  NPNKPFDQALDPSKDPCLKVKCSPHKVCV 98

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 372,997,761
Number of Sequences: 1393205
Number of extensions: 7642998
Number of successful extensions: 14218
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 13887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14205
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 6689237688
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 SPD075e03_f BP049998 1 441 2 SPD034f10_f BP046725 14 353

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