Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018258A_C01 KMC018258A_c01
(610 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180569.1| putative Fe(II) transport protein; protein id: ... 212 3e-54
gb|AAD30548.1|AF136579_1 iron-regulated transporter 1 [Lycopersi... 143 2e-33
gb|AAD30549.1|AF136580_1 iron-regulated transporter 2 [Lycopersi... 141 6e-33
dbj|BAB85123.1| iron regulated metal transporter [Oryza sativa] 139 3e-32
ref|NP_172566.1| ZIP4, a putative zinc transporter; protein id: ... 138 6e-32
>ref|NP_180569.1| putative Fe(II) transport protein; protein id: At2g30080.1
[Arabidopsis thaliana] gi|7487926|pir||T02478 iron
transport protein homolog F23F1.1 - Arabidopsis thaliana
gi|3150412|gb|AAC16964.1| putative Fe(II) transport
protein [Arabidopsis thaliana]
gi|17385786|gb|AAL38433.1|AF369910_1 putative metal
transporter ZIP6 [Arabidopsis thaliana]
gi|20197229|gb|AAM14983.1| putative Fe(II) transport
protein [Arabidopsis thaliana]
Length = 341
Score = 212 bits (539), Expect = 3e-54
Identities = 104/140 (74%), Positives = 120/140 (85%), Gaps = 4/140 (2%)
Frame = -3
Query: 608 MSQNVCTIRPLVAALAFHQIFEGMGLGGCVAQAGFSFATMAYMCFMFSVTTPMGIMLGMA 429
MSQN CTIRPL+AAL+FHQIFEG+GLGGC+AQAGF T+ YMC MF+VTTP+GI+LGM
Sbjct: 202 MSQNKCTIRPLIAALSFHQIFEGLGLGGCIAQAGFKAGTVVYMCLMFAVTTPLGIVLGMV 261
Query: 428 LFSLTGLDDSSPNALIMEGLLGSVSSGILIYMALVDLIAIDFFHNKLM----NSDPRLKK 261
+F+ TG DD +PNALIMEGLLGS SSGILIYMALVDLIA+DFFHNK++ S RLKK
Sbjct: 262 IFAATGYDDQNPNALIMEGLLGSFSSGILIYMALVDLIALDFFHNKMLTTCGESGSRLKK 321
Query: 260 VSFVALTLGSASMSILALWA 201
+ FVAL LGSASMS+LALWA
Sbjct: 322 LCFVALVLGSASMSLLALWA 341
>gb|AAD30548.1|AF136579_1 iron-regulated transporter 1 [Lycopersicon esculentum]
gi|9716481|gb|AAF97509.1|AF246266_1 iron-regulated
transporter 1 [Lycopersicon esculentum]
Length = 350
Score = 143 bits (361), Expect = 2e-33
Identities = 75/135 (55%), Positives = 98/135 (72%)
Frame = -3
Query: 605 SQNVCTIRPLVAALAFHQIFEGMGLGGCVAQAGFSFATMAYMCFMFSVTTPMGIMLGMAL 426
S N CTI+ LVAAL FHQ+FEGMGLGGC+ QA + F A M F F+VTTP GI LG+AL
Sbjct: 219 SSNTCTIKGLVAALCFHQMFEGMGLGGCILQAEYKFMKKAIMAFFFAVTTPFGIALGIAL 278
Query: 425 FSLTGLDDSSPNALIMEGLLGSVSSGILIYMALVDLIAIDFFHNKLMNSDPRLKKVSFVA 246
T +++SP ALI GLL + S+G+LIYMALVDL+A DF +KL S +L+ S++A
Sbjct: 279 --STTYEENSPRALITVGLLNASSAGLLIYMALVDLLAADFMGDKLQGS-VKLQIKSYMA 335
Query: 245 LTLGSASMSILALWA 201
+ LG+ MS++A+WA
Sbjct: 336 VLLGAGGMSVMAIWA 350
>gb|AAD30549.1|AF136580_1 iron-regulated transporter 2 [Lycopersicon esculentum]
gi|9716482|gb|AAF97510.1|AF246266_2 iron-regulated
transporter 2 [Lycopersicon esculentum]
Length = 352
Score = 141 bits (356), Expect = 6e-33
Identities = 75/135 (55%), Positives = 96/135 (70%)
Frame = -3
Query: 605 SQNVCTIRPLVAALAFHQIFEGMGLGGCVAQAGFSFATMAYMCFMFSVTTPMGIMLGMAL 426
S N CTI+ LVAAL FHQ+FEGMGLGGC+ QA + F M F F+VTTP GI LGMAL
Sbjct: 221 SNNTCTIKGLVAALCFHQMFEGMGLGGCILQAEYKFLKKTLMAFFFAVTTPFGIALGMAL 280
Query: 425 FSLTGLDDSSPNALIMEGLLGSVSSGILIYMALVDLIAIDFFHNKLMNSDPRLKKVSFVA 246
T +++SP ALI GLL + S+G+LIYMALVDL+A DF +KL S +L+ S++A
Sbjct: 281 --STTYEETSPRALITVGLLNASSAGLLIYMALVDLLAADFMGDKLQGS-VKLQIKSYMA 337
Query: 245 LTLGSASMSILALWA 201
+ LG+ MS++A WA
Sbjct: 338 VLLGAGGMSLMAKWA 352
>dbj|BAB85123.1| iron regulated metal transporter [Oryza sativa]
Length = 374
Score = 139 bits (350), Expect = 3e-32
Identities = 73/135 (54%), Positives = 96/135 (71%)
Frame = -3
Query: 605 SQNVCTIRPLVAALAFHQIFEGMGLGGCVAQAGFSFATMAYMCFMFSVTTPMGIMLGMAL 426
SQNVCTIRPLVAA+ FHQ+FEGMGLGGC+ QA + + + F FS TTP GI LG+AL
Sbjct: 243 SQNVCTIRPLVAAMCFHQMFEGMGLGGCILQAEYGRRMRSVLVFFFSTTTPFGIALGLAL 302
Query: 425 FSLTGLDDSSPNALIMEGLLGSVSSGILIYMALVDLIAIDFFHNKLMNSDPRLKKVSFVA 246
+ D+SP ALI+ GLL + S+G+L YMALV+L+A DF KL + RL+ +F+A
Sbjct: 303 TRV--YRDNSPTALIVVGLLNAASAGLLHYMALVELLAADFMGPKL-QGNVRLQLAAFLA 359
Query: 245 LTLGSASMSILALWA 201
+ LG+ MS++A WA
Sbjct: 360 VLLGAGGMSVMAKWA 374
>ref|NP_172566.1| ZIP4, a putative zinc transporter; protein id: At1g10970.1
[Arabidopsis thaliana] gi|25347103|pir||F86243 ZIP4,
probable zinc transporter, 61460-62785 [imported] -
Arabidopsis thaliana gi|1931645|gb|AAB65480.1| ZIP4, a
putative zinc transporter; 61460-62785 [Arabidopsis
thaliana]
Length = 374
Score = 138 bits (347), Expect = 6e-32
Identities = 73/136 (53%), Positives = 98/136 (71%)
Frame = -3
Query: 608 MSQNVCTIRPLVAALAFHQIFEGMGLGGCVAQAGFSFATMAYMCFMFSVTTPMGIMLGMA 429
+SQ+ CTIRPL+AAL+FHQ FEG LGGC++QA F + M F++TTP+GI +G A
Sbjct: 242 VSQSPCTIRPLIAALSFHQFFEGFALGGCISQAQFRNKSATIMACFFALTTPLGIGIGTA 301
Query: 428 LFSLTGLDDSSPNALIMEGLLGSVSSGILIYMALVDLIAIDFFHNKLMNSDPRLKKVSFV 249
+ S + SP AL+ EG+L S+S+GIL+YMALVDLIA DF +K M+ + RL+ VS+V
Sbjct: 302 VAS--SFNSHSPGALVTEGILDSLSAGILVYMALVDLIAADFL-SKRMSCNLRLQVVSYV 358
Query: 248 ALTLGSASMSILALWA 201
L LG+ MS LA+WA
Sbjct: 359 MLFLGAGLMSALAIWA 374
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,358,277
Number of Sequences: 1393205
Number of extensions: 10950398
Number of successful extensions: 24691
Number of sequences better than 10.0: 90
Number of HSP's better than 10.0 without gapping: 23857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24604
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
