Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018250A_C01 KMC018250A_c01
(592 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176277.1| clathrin adaptor medium chain protein MU1B, put... 107 9e-23
dbj|BAB44014.1| putative clathrin-associated protein [Oryza sati... 107 1e-22
gb|AAF17661.1|AC009398_10 F20B24.16 [Arabidopsis thaliana] 99 5e-20
ref|NP_172543.1| putative clathrin-coat assembly protein; protei... 99 5e-20
ref|NP_493174.1| UNCoordinated locomotion UNC-101, clathrin-asso... 92 4e-18
>ref|NP_176277.1| clathrin adaptor medium chain protein MU1B, putative; protein id:
At1g60780.1, supported by cDNA: gi_20466371 [Arabidopsis
thaliana] gi|25320049|pir||C96633 probable
Serine/Threonine protein kinase F8A5.29 [imported] -
Arabidopsis thaliana gi|2462748|gb|AAB71967.1| putative
Clathrin Coat Assembly protein [Arabidopsis thaliana]
gi|20466372|gb|AAM20503.1| clathrin adaptor medium chain
protein MU1B, putative [Arabidopsis thaliana]
gi|25084014|gb|AAN72155.1| clathrin adaptor medium chain
protein MU1B, putative [Arabidopsis thaliana]
Length = 428
Score = 107 bits (268), Expect = 9e-23
Identities = 51/53 (96%), Positives = 53/53 (99%)
Frame = -2
Query: 591 ERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQSLPWVRYITMAGEYELRLI 433
ERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQ+LPWVRYITMAGEYELRL+
Sbjct: 376 ERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLV 428
>dbj|BAB44014.1| putative clathrin-associated protein [Oryza sativa (japonica
cultivar-group)] gi|20804602|dbj|BAB92293.1| putative
clathrin-associated protein [Oryza sativa (japonica
cultivar-group)]
Length = 429
Score = 107 bits (266), Expect = 1e-22
Identities = 51/53 (96%), Positives = 53/53 (99%)
Frame = -2
Query: 591 ERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQSLPWVRYITMAGEYELRLI 433
E+KAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQ+LPWVRYITMAGEYELRLI
Sbjct: 377 EKKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLI 429
>gb|AAF17661.1|AC009398_10 F20B24.16 [Arabidopsis thaliana]
Length = 411
Score = 98.6 bits (244), Expect = 5e-20
Identities = 48/53 (90%), Positives = 50/53 (93%)
Frame = -2
Query: 591 ERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQSLPWVRYITMAGEYELRLI 433
ERKAPIRVKFEIP F VSGIQVRYLKIIEKSGYQ+ PWVRYITMAGEYELRL+
Sbjct: 359 ERKAPIRVKFEIPKFIVSGIQVRYLKIIEKSGYQAHPWVRYITMAGEYELRLM 411
>ref|NP_172543.1| putative clathrin-coat assembly protein; protein id: At1g10730.1
[Arabidopsis thaliana] gi|25320047|pir||G86240
hypothetical protein [imported] - Arabidopsis thaliana
gi|4874275|gb|AAD31340.1|AC007354_13 Similar to
gb|L26291 clathrin-associated protein unc-101 from
Caenorhabditis elegans and is a member of the PF|00928
Adapter complexes medium subunit family. [Arabidopsis
thaliana]
Length = 428
Score = 98.6 bits (244), Expect = 5e-20
Identities = 48/53 (90%), Positives = 50/53 (93%)
Frame = -2
Query: 591 ERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQSLPWVRYITMAGEYELRLI 433
ERKAPIRVKFEIP F VSGIQVRYLKIIEKSGYQ+ PWVRYITMAGEYELRL+
Sbjct: 376 ERKAPIRVKFEIPKFIVSGIQVRYLKIIEKSGYQAHPWVRYITMAGEYELRLM 428
>ref|NP_493174.1| UNCoordinated locomotion UNC-101, clathrin-associated protein (48.2
kD) (unc-101) [Caenorhabditis elegans]
gi|21542385|sp|P35602|AP47_CAEEL Clathrin coat assembly
protein AP47 (Clathrin coat associated protein AP47)
(Golgi adaptor AP-1 47 kDa protein) (HA1 47 kDa subunit)
(Clathrin assembly protein assembly protein complex 1
medium chain) (Uncoordinated protein 101)
gi|14530511|emb|CAB05557.3| C. elegans UNC-101 protein
(corresponding sequence K11D2.3) [Caenorhabditis
elegans]
Length = 422
Score = 92.4 bits (228), Expect = 4e-18
Identities = 42/52 (80%), Positives = 47/52 (89%)
Frame = -2
Query: 591 ERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQSLPWVRYITMAGEYELRL 436
E + PI+VKFEIPYFT SGIQVRYLKIIEKSGYQ+LPWVRYIT GEYE+R+
Sbjct: 370 EGRPPIKVKFEIPYFTTSGIQVRYLKIIEKSGYQALPWVRYITQNGEYEMRM 421
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 467,792,424
Number of Sequences: 1393205
Number of extensions: 9600365
Number of successful extensions: 18915
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 18536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18887
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
