Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018224A_C01 KMC018224A_c01
(560 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK55661.1|AF378858_1 At2g01080/F23H14.5 [Arabidopsis thalian... 60 1e-08
ref|NP_565250.1| expressed protein; protein id: At2g01080.1, sup... 60 1e-08
pir||D84420 hypothetical protein At2g01080 [imported] - Arabidop... 40 0.015
ref|ZP_00089509.1| hypothetical protein [Azotobacter vinelandii] 34 1.1
emb|CAB51853.1| inositol 1,4,5-trisphosphate receptor [Drosophil... 33 1.8
>gb|AAK55661.1|AF378858_1 At2g01080/F23H14.5 [Arabidopsis thaliana]
gi|16323356|gb|AAL15391.1| At2g01080/F23H14.5
[Arabidopsis thaliana]
Length = 231
Score = 60.5 bits (145), Expect = 1e-08
Identities = 35/68 (51%), Positives = 43/68 (62%), Gaps = 1/68 (1%)
Frame = -3
Query: 555 VDGMRLLQDDATGLI-NSSLNDQVYFQVLVDVNAKTRVKNLYSPGVRVSVECDIMIRPRE 379
VD + L+Q A L+ ++SLND+V V DV AK RV N SPGV+VSV C I I PR+
Sbjct: 157 VDRVNLMQAHAADLVRDASLNDRVELTVRGDVGAKIRVMNFDSPGVQVSVNCGIGISPRK 216
Query: 378 QTLTSKPC 355
Q L K C
Sbjct: 217 QALIYKQC 224
>ref|NP_565250.1| expressed protein; protein id: At2g01080.1, supported by cDNA:
gi_14190360 [Arabidopsis thaliana]
gi|20197906|gb|AAF18656.2| expressed protein
[Arabidopsis thaliana]
Length = 231
Score = 60.5 bits (145), Expect = 1e-08
Identities = 35/68 (51%), Positives = 43/68 (62%), Gaps = 1/68 (1%)
Frame = -3
Query: 555 VDGMRLLQDDATGLI-NSSLNDQVYFQVLVDVNAKTRVKNLYSPGVRVSVECDIMIRPRE 379
VD + L+Q A L+ ++SLND+V V DV AK RV N SPGV+VSV C I I PR+
Sbjct: 157 VDRVNLMQAHAADLVRDASLNDRVELTVRGDVGAKIRVMNFDSPGVQVSVNCGIGISPRK 216
Query: 378 QTLTSKPC 355
Q L K C
Sbjct: 217 QALIYKQC 224
>pir||D84420 hypothetical protein At2g01080 [imported] - Arabidopsis thaliana
Length = 220
Score = 40.4 bits (93), Expect = 0.015
Identities = 24/48 (50%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = -3
Query: 555 VDGMRLLQDDATGLI-NSSLNDQVYFQVLVDVNAKTRVKNLYSPGVRV 415
VD + L+Q A L+ ++SLND+V V DV AK RV N SPGV+V
Sbjct: 157 VDRVNLMQAHAADLVRDASLNDRVELTVRGDVGAKIRVMNFDSPGVQV 204
>ref|ZP_00089509.1| hypothetical protein [Azotobacter vinelandii]
Length = 282
Score = 34.3 bits (77), Expect = 1.1
Identities = 14/28 (50%), Positives = 22/28 (78%)
Frame = +1
Query: 370 ESLLSWTDHYITLHRDPNTRRIQILDPG 453
++L ++ D+YI L +DP TRRI ++DPG
Sbjct: 29 DALPAFQDNYIWLLQDPTTRRIAVVDPG 56
>emb|CAB51853.1| inositol 1,4,5-trisphosphate receptor [Drosophila melanogaster]
Length = 2828
Score = 33.5 bits (75), Expect = 1.8
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Frame = +3
Query: 24 NQKKLETMLE*RRSYIHTYKHTDQELEISNMNLASNTS*DVNLTFLTLDG--GSWTVITG 197
N+K L T ++ R+ + + N L S + +L +G GSW I
Sbjct: 110 NKKLLGTSIQYGRAVVQLLHLKSNKYLTVNKRLPSLLEKNAMRVYLDANGNEGSWFYIKP 169
Query: 198 SWNLKSCTYHNNTLVVKDLKQILTEPN--QNHLTVTASYPLTDSPH-YNISIKHLHTAWK 368
+ L+S + +VV K IL+ N Q +L V A+Y L D+P +++ + T+WK
Sbjct: 170 FYKLRSI---GDYVVVVGDKVILSPVNADQQNLHVAANYELPDNPGCKEVNVLNSSTSWK 226
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 428,628,667
Number of Sequences: 1393205
Number of extensions: 8322353
Number of successful extensions: 17857
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 17441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17853
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
