Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018222A_C01 KMC018222A_c01
(463 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK14326.1|AF325506_1 APETAL2-like protein [Pisum sativum] 92 3e-18
gb|AAL57045.2|AF332215_1 transcription factor AHAP2 [Malus x dom... 72 3e-12
gb|AAD39439.1|AF132001_1 PHAP2A protein [Petunia x hybrida] 51 5e-06
gb|AAO52746.1| LIPLESS1 [Antirrhinum majus] 42 0.002
gb|AAO52747.1| LIPLESS2 [Antirrhinum majus] 42 0.003
>gb|AAK14326.1|AF325506_1 APETAL2-like protein [Pisum sativum]
Length = 533
Score = 91.7 bits (226), Expect = 3e-18
Identities = 45/62 (72%), Positives = 50/62 (80%), Gaps = 2/62 (3%)
Frame = -3
Query: 461 RIGSDLSLSMSDQQQQQQQWQMGPPHLLATAAASSGFPPQIR--PSQVWLHKNGFHPLMR 288
R+GSDLSLS ++ QQQQQQWQ G +L + AAASSGFPPQIR SQ WLHKNGFH LMR
Sbjct: 472 RVGSDLSLSTNNHQQQQQQWQPGSHYLSSAAAASSGFPPQIRTPSSQTWLHKNGFHTLMR 531
Query: 287 PS 282
PS
Sbjct: 532 PS 533
>gb|AAL57045.2|AF332215_1 transcription factor AHAP2 [Malus x domestica]
Length = 549
Score = 72.0 bits (175), Expect = 3e-12
Identities = 41/63 (65%), Positives = 43/63 (68%), Gaps = 5/63 (7%)
Frame = -3
Query: 461 RIGSDLSLSMSDQQQQQQQWQMGPP--HLLATAAASSGFPPQIRP---SQVWLHKNGFHP 297
RIGSDLSLS SD QQQ WQ P +L ATAAASSGFPPQ+RP WL KNGFH
Sbjct: 489 RIGSDLSLSTSDHQQQ---WQSATPTSNLFATAAASSGFPPQLRPLPTQNSWLQKNGFHT 545
Query: 296 LMR 288
L R
Sbjct: 546 LAR 548
>gb|AAD39439.1|AF132001_1 PHAP2A protein [Petunia x hybrida]
Length = 519
Score = 51.2 bits (121), Expect = 5e-06
Identities = 35/66 (53%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Frame = -3
Query: 461 RIGS----DLSLSMSDQQQQQQQWQMG-PPHLLATAAASSGFPPQIRPSQVWLHKNGFHP 297
RIG+ DLSLS S+ Q WQ PP + A AAASSGF QI Q W +NGFH
Sbjct: 457 RIGATNVGDLSLSSSNASSQ---WQSNLPPQIFAAAAASSGFSQQIVRPQNWSSENGFHH 513
Query: 296 -LMRPS 282
LMRPS
Sbjct: 514 FLMRPS 519
>gb|AAO52746.1| LIPLESS1 [Antirrhinum majus]
Length = 505
Score = 42.4 bits (98), Expect = 0.002
Identities = 26/54 (48%), Positives = 30/54 (55%), Gaps = 8/54 (14%)
Frame = -3
Query: 419 QQQQQWQMGPPHLLATAAASSGFP------PQIRPSQVWLHKNGFHPL--MRPS 282
+ +QQWQM L A+AAASSGFP RP L KNGFH +RPS
Sbjct: 452 RNEQQWQMNHHQLFASAAASSGFPHAPPLLSSSRPRDWPLQKNGFHSSYNIRPS 505
>gb|AAO52747.1| LIPLESS2 [Antirrhinum majus]
Length = 505
Score = 42.0 bits (97), Expect = 0.003
Identities = 29/57 (50%), Positives = 32/57 (55%), Gaps = 7/57 (12%)
Frame = -3
Query: 431 SDQQQQQQQWQMGPPHLLATAAASSGFP---PQIRPSQVWLH--KNGFHP--LMRPS 282
S + +QQWQM H AAASSGFP QI Q WL KNG HP LMRP+
Sbjct: 451 SSVSRNEQQWQMNYHHQF--AAASSGFPQAQAQIIKPQNWLQIKKNGIHPSTLMRPT 505
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 384,646,092
Number of Sequences: 1393205
Number of extensions: 8129880
Number of successful extensions: 34868
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 25964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32291
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11998661767
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
