Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018218A_C01 KMC018218A_c01
(536 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM09320.2| similar to Dictyostelium discoideum (Slime mold).... 34 0.98
pir||B96602 hypothetical protein T6H22.12 [imported] - Arabidops... 32 3.7
ref|ZP_00119409.1| hypothetical protein [Cytophaga hutchinsonii] 32 4.8
ref|NP_057880.1| T cell cytokine receptor; cytokine receptor fam... 32 6.3
dbj|BAC65981.1| putative alpha glucosidase [Oryza sativa (japoni... 31 8.3
>gb|AAM09320.2| similar to Dictyostelium discoideum (Slime mold). Homeobox-containing
protein (Fragment)
Length = 1108
Score = 34.3 bits (77), Expect = 0.98
Identities = 21/74 (28%), Positives = 32/74 (42%), Gaps = 4/74 (5%)
Frame = +2
Query: 29 ANISVRPFKQSS*SYSAPNIY----CTKK*DNKFXVVERSGENLTKRNDMTSSNNQNKRS 196
A+ P S + S+ N Y T +N + SG+NL K + T++NN N +
Sbjct: 887 ASYQSTPIITSGANISSDNFYYVPPVTNSNNNNNENINNSGDNLNKNTNTTNNNNNNNNN 946
Query: 197 S*AFEFIEETEKPL 238
+ FI PL
Sbjct: 947 NNPLSFISPQHNPL 960
>pir||B96602 hypothetical protein T6H22.12 [imported] - Arabidopsis thaliana
gi|6056378|gb|AAF02842.1|AC009894_13 Hypothetical
protein [Arabidopsis thaliana]
Length = 309
Score = 32.3 bits (72), Expect = 3.7
Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 7/123 (5%)
Frame = -3
Query: 531 SWSTAFSPKSTVKLVNDSNLH-------SGENETGMISNVPFPQEIHGKLCITGSSSHAG 373
S+S A SPK + ++ H S ++ + ++ P + G +C+T SS H+
Sbjct: 192 SYSAASSPKLFSGAASPTSSHYDIRMWSSTSQQSSVANSPPRSHSVSGAVCLTNSSVHSW 251
Query: 372 LGDRVSTPAGAHQGSIFAKDTRNPGQPVDHSSEDKRAH*IESLRLRGFSVSSINSKA*EL 193
L R TP + K + +R I + LR FS + +K +L
Sbjct: 252 LTSRNLTPGSRAARKHYRKQRKYL----------ERKTMIFTYPLRDFSQVGVETKTHQL 301
Query: 192 LLF 184
L F
Sbjct: 302 LSF 304
>ref|ZP_00119409.1| hypothetical protein [Cytophaga hutchinsonii]
Length = 322
Score = 32.0 bits (71), Expect = 4.8
Identities = 37/148 (25%), Positives = 72/148 (48%)
Frame = -3
Query: 486 NDSNLHSGENETGMISNVPFPQEIHGKLCITGSSSHAGLGDRVSTPAGAHQGSIFAKDTR 307
ND N++ ++ +SNVP P G + TG + +AG + P A + K++
Sbjct: 143 NDPNINYSKD----VSNVPMPNFGAG-VYYTGKNYYAGF----AVPFLAQNR--YDKNSY 191
Query: 306 NPGQPVDHSSEDKRAH*IESLRLRGFSVSSINSKA*ELLLFWLLLDVISFLFVKFSPDLS 127
NPG D + R + + + F++S + ++L+ + + D+ + F+ DL
Sbjct: 192 NPGG--DIYGKQVRTYFLSGGYI--FTISPVVKLEPQVLMRYAVNDMYR---LPFNADL- 243
Query: 126 TTXNLLSYFFVQYMLGAEYDHDDCLKGL 43
NL +F+ ++M+GA Y D ++G+
Sbjct: 244 ---NLSCFFYDRFMIGATYRTDKSIEGV 268
>ref|NP_057880.1| T cell cytokine receptor; cytokine receptor family, class 1
(WSXWS), member 1 [Mus musculus]
gi|3153243|gb|AAC40121.1| class I cytokine receptor [Mus
musculus] gi|11036794|gb|AAG27298.1|AF265243_1 type-I T
cell cytokine receptor [Mus musculus]
gi|23959147|gb|AAH32878.1| similar to T cell cytokine
receptor [Mus musculus]
Length = 623
Score = 31.6 bits (70), Expect = 6.3
Identities = 20/58 (34%), Positives = 29/58 (49%)
Frame = +2
Query: 362 RSPSPAWLELPVIHNFP*ISCGNGTLLIIPVSFSPLCKLLSLTSFTVDXGENAVDQDP 535
+SP PAW+E V +S GN T + P + S +C L+ S D G ++ D P
Sbjct: 280 KSPVPAWMEWAV------VSPGNSTSWVPPTNLSLVC--LAPESAPCDVGVSSADGSP 329
>dbj|BAC65981.1| putative alpha glucosidase [Oryza sativa (japonica cultivar-group)]
Length = 821
Score = 31.2 bits (69), Expect = 8.3
Identities = 15/47 (31%), Positives = 25/47 (52%), Gaps = 3/47 (6%)
Frame = -3
Query: 534 GSWSTAFSP---KSTVKLVNDSNLHSGENETGMISNVPFPQEIHGKL 403
G W+ P KST K + SN+H G+++ G + N + ++G L
Sbjct: 363 GIWNDMNEPAVFKSTTKTMPVSNIHRGDDDIGGVQNHSYYHNVYGML 409
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,950,407
Number of Sequences: 1393205
Number of extensions: 9459363
Number of successful extensions: 24787
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 23906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24765
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
