Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018216A_C01 KMC018216A_c01
(417 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196716.1| putative protein; protein id: At5g11550.1 [Arab... 111 2e-24
ref|NP_613085.1| Ac1629 [Mamestra configurata nucleopolyhedrovir... 61 3e-09
pir||S22697 extensin - Volvox carteri (fragment) gi|21992|emb|CA... 60 8e-09
ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|... 57 4e-08
dbj|BAC57890.1| pherophorin [Volvox carteri f. nagariensis] 57 5e-08
>ref|NP_196716.1| putative protein; protein id: At5g11550.1 [Arabidopsis thaliana]
gi|11357472|pir||T48514 hypothetical protein F15N18.140
- Arabidopsis thaliana gi|7573412|emb|CAB87715.1|
putative protein [Arabidopsis thaliana]
gi|27754693|gb|AAO22790.1| unknown protein [Arabidopsis
thaliana] gi|28394025|gb|AAO42420.1| unknown protein
[Arabidopsis thaliana]
Length = 314
Score = 111 bits (278), Expect = 2e-24
Identities = 58/94 (61%), Positives = 68/94 (71%), Gaps = 6/94 (6%)
Frame = -1
Query: 417 ELMCTVAEGAEAVRAHALAVPVMVTMMGKTGARGKEYAIGVLAVIY------GGAVAEHM 256
ELMCT AEGA VRAHA+ VP MV +M + RG+EYAI +L+V+Y G + E
Sbjct: 208 ELMCTTAEGAAEVRAHAMTVPAMVAVMARLAGRGREYAISILSVVYGKGGEGGDSGEEIA 267
Query: 255 TAPPEEVARAVELALQGECSARGKRKGGQLLKTL 154
AP EEVARAV LAL+GEC+ARGKRKG QLLKTL
Sbjct: 268 VAPAEEVARAVALALEGECTARGKRKGAQLLKTL 301
Score = 33.9 bits (76), Expect = 0.49
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Frame = +3
Query: 216 PALPHAPPP----LAAPSYAPPPLLRISPPAPRWRTPSHAPPSCPSLLPSPVRQERGPSP 383
P PH P S + S +WR P H + PS P P P P
Sbjct: 33 PTSPHQQQPRRKATTTSSSSSSSSTSTSQSFTQWRFPHHLDQT-PSTAPPP------PHP 85
Query: 384 PPPPPP 401
PPPPPP
Sbjct: 86 PPPPPP 91
>ref|NP_613085.1| Ac1629 [Mamestra configurata nucleopolyhedrovirus A]
gi|20043275|gb|AAM09110.1| Ac1629 [Mamestra configurata
nucleopolyhedrovirus]
Length = 466
Score = 61.2 bits (147), Expect = 3e-09
Identities = 36/87 (41%), Positives = 47/87 (53%), Gaps = 5/87 (5%)
Frame = +3
Query: 156 VSSIIAHPSSSLSRYTPLAVPALPHAPP--PLAAPSYAPP--PLLRISPPAPRWRTPS-H 320
+ SI+A P ++ P A P+LP APP P P+ APP PLL ++PP P+
Sbjct: 181 MGSIVATPEINMRPSLPPAPPSLPPAPPSLPPIQPTPAPPVPPLLPVTPPTLPATPPTIP 240
Query: 321 APPSCPSLLPSPVRQERGPSPPPPPPP 401
PP S LP+ + P PPPPPPP
Sbjct: 241 TPPPANSTLPTQASGSQPPPPPPPPPP 267
>pir||S22697 extensin - Volvox carteri (fragment) gi|21992|emb|CAA46283.1|
extensin [Volvox carteri]
Length = 464
Score = 59.7 bits (143), Expect = 8e-09
Identities = 32/76 (42%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Frame = +3
Query: 180 SSSLSRYTPLAVPALPHAPPP-LAAPSYAPPPLLRISPPAPR-WRTPSHAPPSCPSLLPS 353
S L + +P P +P +PPP +A+P PPP + SPP P+ +P PP PS P
Sbjct: 264 SPPLPKTSPPPPPRVPPSPPPPVASPPPPPPPRVSPSPPPPQPVSSPPPPPPPRPSPSPP 323
Query: 354 PVRQERGPSPPPPPPP 401
P R P PP PPPP
Sbjct: 324 PPRSSPSPPPPSPPPP 339
Score = 54.7 bits (130), Expect = 3e-07
Identities = 29/64 (45%), Positives = 37/64 (57%)
Frame = +3
Query: 225 PHAPPPLAAPSYAPPPLLRISPPAPRWRTPSHAPPSCPSLLPSPVRQERGPSPPPPPPPQ 404
P PPP ++PS PPP+ +SPP P P +PP P+ P P + PSPPP PPP
Sbjct: 348 PSPPPPRSSPS-PPPPV--VSPPPP---PPRASPPPPPASSPPPPPRPPPPSPPPSPPPP 401
Query: 405 CTSA 416
T+A
Sbjct: 402 ATAA 405
Score = 53.5 bits (127), Expect = 6e-07
Identities = 33/75 (44%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = +3
Query: 204 PLAVPALPHAPPPLAAPSYAPPPLLRISPPAPRWRTPSHAPPSCPSLLPSPVRQERGPSP 383
P V P P P+++P PPP SPP PR +PS PPS P PSP PSP
Sbjct: 294 PPRVSPSPPPPQPVSSPPPPPPPRPSPSPPPPR-SSPSPPPPSPPP--PSPPPPRPSPSP 350
Query: 384 PPP-----PPPQCTS 413
PPP PPP S
Sbjct: 351 PPPRSSPSPPPPVVS 365
Score = 52.0 bits (123), Expect = 2e-06
Identities = 30/82 (36%), Positives = 34/82 (40%), Gaps = 4/82 (4%)
Frame = +3
Query: 177 PSSSLSRYTPLAVPALPHAPPPLAAPSYAPPPLLRISPPAPRWRTPSHAPPSCPSLLPSP 356
P +S P P PPP PS +PPP P P P PP PS P P
Sbjct: 293 PPPRVSPSPPPPQPVSSPPPPPPPRPSPSPPPPRSSPSPPPPSPPPPSPPPPRPSPSPPP 352
Query: 357 VRQERGPSP----PPPPPPQCT 410
R P P PPPPPP+ +
Sbjct: 353 PRSSPSPPPPVVSPPPPPPRAS 374
Score = 48.9 bits (115), Expect = 1e-05
Identities = 30/67 (44%), Positives = 34/67 (49%), Gaps = 4/67 (5%)
Frame = +3
Query: 225 PHAPPPLAAPSYAPPPLLRISPPAPRWRTPSHAPPSCPSLLPSPVRQERGPSPPP----P 392
P PPP ++PS PP SPP PR PS +PP P PSP P PPP P
Sbjct: 320 PSPPPPRSSPSPPPPSPPPPSPPPPR---PSPSPPP-PRSSPSPPPPVVSPPPPPPRASP 375
Query: 393 PPPQCTS 413
PPP +S
Sbjct: 376 PPPPASS 382
Score = 48.5 bits (114), Expect = 2e-05
Identities = 33/90 (36%), Positives = 41/90 (44%), Gaps = 18/90 (20%)
Frame = +3
Query: 201 TPLAVPALPHAPPPLAAPSYAPPPLLRISPPAPRWRTPSH-----------APPSCPSLL 347
+P P + +PPP A S +PPP R SPP R +PS +PP P +
Sbjct: 221 SPPPPPRVSTSPPPPARVSSSPPPATR-SPPPRRITSPSPVLTASPPLPKTSPPPPPRVP 279
Query: 348 PSPVRQERGPSPPPPP-------PPQCTSA 416
PSP P PPPPP PPQ S+
Sbjct: 280 PSPPPPVASPPPPPPPRVSPSPPPPQPVSS 309
Score = 48.1 bits (113), Expect = 2e-05
Identities = 32/77 (41%), Positives = 35/77 (44%)
Frame = +3
Query: 168 IAHPSSSLSRYTPLAVPALPHAPPPLAAPSYAPPPLLRISPPAPRWRTPSHAPPSCPSLL 347
I PS L+ PL + P PPP PS PPP + PP P R PP P
Sbjct: 254 ITSPSPVLTASPPLPKTSPP--PPPRVPPS--PPPPVASPPPPPPPRVSPSPPPPQPVSS 309
Query: 348 PSPVRQERGPSPPPPPP 398
P P R PSP PPPP
Sbjct: 310 PPPPPPPR-PSPSPPPP 325
Score = 47.8 bits (112), Expect = 3e-05
Identities = 30/76 (39%), Positives = 36/76 (46%), Gaps = 13/76 (17%)
Frame = +3
Query: 216 PALPHAPPPLAAPSYAP-----PPLLRISPPAPRWRTP--------SHAPPSCPSLLPSP 356
P +PPP S +P PPL + SPP P R P S PP P + PSP
Sbjct: 243 PPATRSPPPRRITSPSPVLTASPPLPKTSPPPPP-RVPPSPPPPVASPPPPPPPRVSPSP 301
Query: 357 VRQERGPSPPPPPPPQ 404
+ SPPPPPPP+
Sbjct: 302 PPPQPVSSPPPPPPPR 317
Score = 47.8 bits (112), Expect = 3e-05
Identities = 35/96 (36%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Frame = +3
Query: 177 PSSSLSRYTPLAVPALPHAPPPLAAPSYAPPPLLRISPPAPRWRTPSHAPPSCPSLLPSP 356
P S S P V + P PPP +PS PPP SPP P PS PP PS P P
Sbjct: 295 PRVSPSPPPPQPVSSPPPPPPPRPSPS-PPPPRSSPSPPPPSPPPPSPPPPR-PSPSPPP 352
Query: 357 VRQERGPSPP--------------------PPPPPQ 404
R P PP PPPPP+
Sbjct: 353 PRSSPSPPPPVVSPPPPPPRASPPPPPASSPPPPPR 388
Score = 46.2 bits (108), Expect = 9e-05
Identities = 32/83 (38%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Frame = +3
Query: 177 PSSSLSRYTPLAVPALPH---APPPLAAPSYAPPPLLRISPPAPRWRTPSHAPPSCPSLL 347
P SS S P+ P P +PPP A S PPP R PP+P P A +
Sbjct: 353 PRSSPSPPPPVVSPPPPPPRASPPPPPASSPPPPP--RPPPPSPPPSPPPPATAAANPPS 410
Query: 348 PSPVRQERGPSP----PPPPPPQ 404
P+P R G P PPPPPP+
Sbjct: 411 PAPSRSRAGGPPLGTRPPPPPPE 433
Score = 45.4 bits (106), Expect = 2e-04
Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Frame = +3
Query: 159 SSIIAHPSSSLSRYTPLAVPA-LPHAPPPLAAPSYAPPPLLRIS---PPAPRWRTPSHAP 326
+ I+A ++++ T AV +PPP S +PPP R+S PPA R P
Sbjct: 196 ADIVADSKNTVALVTAAAVVVQTTPSPPPPPRVSTSPPPPARVSSSPPPATRSPPPRRIT 255
Query: 327 PSCPSLLPSPVRQERGPSPPP-----PPPP 401
P L SP + P PPP PPPP
Sbjct: 256 SPSPVLTASPPLPKTSPPPPPRVPPSPPPP 285
Score = 43.9 bits (102), Expect = 5e-04
Identities = 30/75 (40%), Positives = 32/75 (42%)
Frame = +3
Query: 177 PSSSLSRYTPLAVPALPHAPPPLAAPSYAPPPLLRISPPAPRWRTPSHAPPSCPSLLPSP 356
P SS S P P P PPP +PS PPP SPP P P P + P P P
Sbjct: 325 PRSSPSPPPPSPPP--PSPPPPRPSPS-PPPPRSSPSPPPPVVSPPPPPPRASPP--PPP 379
Query: 357 VRQERGPSPPPPPPP 401
P PPPP P
Sbjct: 380 ASSPPPPPRPPPPSP 394
Score = 43.5 bits (101), Expect = 6e-04
Identities = 26/66 (39%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Frame = +3
Query: 231 APPPLAAPSYAPPPLLRISPPAPRWRTPSHAPPSCPSLLPSPVRQERGPSPPPP-----P 395
A PPL S PPP + SPP P P PP P P P PPPP P
Sbjct: 263 ASPPLPKTSPPPPPRVPPSPPPPVASPPPPPPPRVSPSPPPPQPVSSPPPPPPPRPSPSP 322
Query: 396 PPQCTS 413
PP +S
Sbjct: 323 PPPRSS 328
Score = 37.0 bits (84), Expect = 0.058
Identities = 36/103 (34%), Positives = 44/103 (41%), Gaps = 27/103 (26%)
Frame = +3
Query: 177 PSSSLSRYTPLAVPAL--PHAPPPLAAP----SYAPPPLLRISPPAPRWRTPSHAPPSC- 335
PS R +P P + P PPP A+P + +PPP R PP+P PS PP+
Sbjct: 348 PSPPPPRSSPSPPPPVVSPPPPPPRASPPPPPASSPPPPPRPPPPSP---PPSPPPPATA 404
Query: 336 ----PSLLPS-------PVRQERGPSPP----PP-----PPPQ 404
PS PS P+ P PP PP PPPQ
Sbjct: 405 AANPPSPAPSRSRAGGPPLGTRPPPPPPEDDAPPPDYYFPPPQ 447
Score = 33.5 bits (75), Expect = 0.64
Identities = 26/71 (36%), Positives = 32/71 (44%), Gaps = 9/71 (12%)
Frame = +3
Query: 219 ALPHAPPPLAAPSYAPPPLLRIS-PPAPRWRTPSHAPPSCPS------LLPSPVRQERGP 377
AL A + + +PPP R+S P P R S PP+ S PSPV P
Sbjct: 207 ALVTAAAVVVQTTPSPPPPPRVSTSPPPPARVSSSPPPATRSPPPRRITSPSPVLTASPP 266
Query: 378 SP--PPPPPPQ 404
P PPPPP+
Sbjct: 267 LPKTSPPPPPR 277
>ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|dbj|BAC45786.1|
blr0521 [Bradyrhizobium japonicum USDA 110]
Length = 745
Score = 57.4 bits (137), Expect = 4e-08
Identities = 31/82 (37%), Positives = 38/82 (45%)
Frame = +3
Query: 171 AHPSSSLSRYTPLAVPALPHAPPPLAAPSYAPPPLLRISPPAPRWRTPSHAPPSCPSLLP 350
A P ++ + P A P P P A P PPP R +PP P P A P PS P
Sbjct: 69 APPPAAAPPHPPAAPPPAAAPPRPAAPPPPPPPPAARPAPPPP---PPPPAAPKQPSPPP 125
Query: 351 SPVRQERGPSPPPPPPPQCTSA 416
+ Q+ P+PPPP PP A
Sbjct: 126 AAAPQQHAPTPPPPAPPAARPA 147
Score = 52.8 bits (125), Expect = 1e-06
Identities = 32/73 (43%), Positives = 36/73 (48%), Gaps = 6/73 (8%)
Frame = +3
Query: 204 PLAVPALPHAPPPLAAPSY---APPPLLRISPPAPRWRTPSHAPPSC---PSLLPSPVRQ 365
P A PA P APPP AAP + APPP +PP P P PP+ P P P
Sbjct: 60 PPAAPARPAAPPPAAAPPHPPAAPPPAA--APPRPAAPPPPPPPPAARPAPPPPPPPPAA 117
Query: 366 ERGPSPPPPPPPQ 404
+ PSPPP PQ
Sbjct: 118 PKQPSPPPAAAPQ 130
Score = 52.4 bits (124), Expect = 1e-06
Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Frame = +3
Query: 204 PLAVPALPHAPPPLAAPSYAPPPLLRISPPAPRWRTPSHAPPSCPSLLPSPVRQERGP-- 377
P A PA P PPP AAP PP AP+ P+ PP+ P+ P+P P
Sbjct: 102 PAARPAPPPPPPPPAAPKQPSPP----PAAAPQQHAPTPPPPAPPAARPAPTPPAPPPAA 157
Query: 378 ----SPPPPPPP 401
+PPPPPPP
Sbjct: 158 APQHAPPPPPPP 169
Score = 49.7 bits (117), Expect = 9e-06
Identities = 32/75 (42%), Positives = 37/75 (48%), Gaps = 4/75 (5%)
Frame = +3
Query: 204 PLAVPA-LPHAPPPLAAPSYAPPPLLRISPPAPRWR---TPSHAPPSCPSLLPSPVRQER 371
P A PA P APPP AAP +APPP PP P R TP PP+ P+ P+P
Sbjct: 142 PAARPAPTPPAPPPAAAPQHAPPP-----PPPPAARPTPTPPPPPPAGPAARPTPA--PT 194
Query: 372 GPSPPPPPPPQCTSA 416
P PPP +A
Sbjct: 195 ATPTPVAPPPAAPTA 209
Score = 47.4 bits (111), Expect = 4e-05
Identities = 34/89 (38%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Frame = +3
Query: 171 AHPSSSLSRYTPLAVPALP-----HAPPPLAAPSYAPPPLLRISPPAPRWR---TPSHAP 326
A P P A PA APPP AAP +APPP PP P R TP P
Sbjct: 127 AAPQQHAPTPPPPAPPAARPAPTPPAPPPAAAPQHAPPP-----PPPPAARPTPTPPPPP 181
Query: 327 PSCPSLLPSPVRQERGPSPPPPPPPQCTS 413
P+ P+ P+P P+P PPP T+
Sbjct: 182 PAGPAARPTPA-PTATPTPVAPPPAAPTA 209
Score = 47.0 bits (110), Expect = 6e-05
Identities = 28/71 (39%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Frame = +3
Query: 204 PLAVPALPHAPPPLAAPSYAP-----PPLLRISPPAPRWRTPSHAPPSCPSLLPSPVRQE 368
P P P PP AAP AP PP P P P+ APP + P P
Sbjct: 44 PDGKPKQPPKGPPGAAPPAAPARPAAPPPAAAPPHPPAAPPPAAAPPRPAAPPPPPPPPA 103
Query: 369 RGPSPPPPPPP 401
P+PPPPPPP
Sbjct: 104 ARPAPPPPPPP 114
Score = 42.4 bits (98), Expect = 0.001
Identities = 29/78 (37%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +3
Query: 177 PSSSLSRYTPLAVPALPHAP--PPLAAPSYAPPPLLRISPPAPRWRTPSHAPPSCP--SL 344
P++ P A HAP PP A P+ P P PPA P HAPP P +
Sbjct: 115 PAAPKQPSPPPAAAPQQHAPTPPPPAPPAARPAPTPPAPPPAA---APQHAPPPPPPPAA 171
Query: 345 LPSPVRQERGPSPPPPPP 398
P+ P+PPPPPP
Sbjct: 172 RPT-------PTPPPPPP 182
Score = 38.5 bits (88), Expect = 0.020
Identities = 28/88 (31%), Positives = 36/88 (40%)
Frame = +3
Query: 153 AVSSIIAHPSSSLSRYTPLAVPALPHAPPPLAAPSYAPPPLLRISPPAPRWRTPSHAPPS 332
A + +A P ++ + PA AP P AP+ P P + PAP TP P
Sbjct: 195 ATPTPVAPPPAAPTARPGSPAPAATPAPTPTPAPTATPAP---TATPAP-GSTPGAPPAG 250
Query: 333 CPSLLPSPVRQERGPSPPPPPPPQCTSA 416
P P VR P+ PP P T A
Sbjct: 251 RPGAPPPGVRPGSPPAAGSPPAPGATPA 278
Score = 37.7 bits (86), Expect = 0.034
Identities = 29/83 (34%), Positives = 36/83 (42%), Gaps = 7/83 (8%)
Frame = +3
Query: 177 PSSSLSRYTPLA------VPALPHAPPPLAAPSYAPPPLLRISPPAPRWRTPSHAPPS-C 335
P+ + + TP A +PA P AP AAPS P PP APP+
Sbjct: 342 PAGAPAAGTPAAPPQAGGLPARPAAPAGAAAPSTVPGSAAATPPP----NRAQFAPPTVT 397
Query: 336 PSLLPSPVRQERGPSPPPPPPPQ 404
P+ +P P PPPP PPQ
Sbjct: 398 PAFQAAPT--VVAPLPPPPRPPQ 418
Score = 35.0 bits (79), Expect = 0.22
Identities = 28/81 (34%), Positives = 35/81 (42%), Gaps = 7/81 (8%)
Frame = +3
Query: 177 PSSSLSRYTPLAVPALPHA---PPPLAAPS-YAPP---PLLRISPPAPRWRTPSHAPPSC 335
P++ + P PA P A P P A P+ APP P R PAP TP+ P
Sbjct: 169 PAARPTPTPPPPPPAGPAARPTPAPTATPTPVAPPPAAPTARPGSPAPA-ATPAPTPTPA 227
Query: 336 PSLLPSPVRQERGPSPPPPPP 398
P+ P+P S P PP
Sbjct: 228 PTATPAPTATPAPGSTPGAPP 248
Score = 33.1 bits (74), Expect = 0.83
Identities = 27/76 (35%), Positives = 32/76 (41%), Gaps = 5/76 (6%)
Frame = +3
Query: 177 PSSSLSRYTPLAVPALPHAPPP---LAAPSYAPPPLLRISPPAPRWRTPSHAPPSCP--S 341
P ++ S P A PA P P PS P P S PAP TP+ P +
Sbjct: 264 PPAAGSPPAPGATPAPTTTPAPGGTATPPSGRPGPA---STPAPGAATPAPTATPAPGGA 320
Query: 342 LLPSPVRQERGPSPPP 389
L P P R GP+P P
Sbjct: 321 LTPPPGRPGAGPTPGP 336
Score = 32.3 bits (72), Expect = 1.4
Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Frame = +3
Query: 204 PLAVPALPHAP--PPLAAPSYAPPPLLRISPPAPRWRTPSHAPPSCPSLLPSPVRQERGP 377
P A PA P PP P APPP +R P P+ P+ P+P P
Sbjct: 234 PTATPAPGSTPGAPPAGRPG-APPPGVRPGSPPAAGSPPAPGATPAPTTTPAPGGTATPP 292
Query: 378 SPPPPP 395
S P P
Sbjct: 293 SGRPGP 298
Score = 32.3 bits (72), Expect = 1.4
Identities = 25/66 (37%), Positives = 28/66 (41%), Gaps = 1/66 (1%)
Frame = +3
Query: 201 TPLAVPA-LPHAPPPLAAPSYAPPPLLRISPPAPRWRTPSHAPPSCPSLLPSPVRQERGP 377
TP A PA P APPP P P SPPAP TP+ P +P GP
Sbjct: 243 TPGAPPAGRPGAPPPGVRPGSPPAAG---SPPAPG-ATPAPTTTPAPGGTATPPSGRPGP 298
Query: 378 SPPPPP 395
+ P P
Sbjct: 299 ASTPAP 304
Score = 29.6 bits (65), Expect = 9.2
Identities = 18/59 (30%), Positives = 23/59 (38%)
Frame = +3
Query: 225 PHAPPPLAAPSYAPPPLLRISPPAPRWRTPSHAPPSCPSLLPSPVRQERGPSPPPPPPP 401
P AP AP+ P P +PP+ R S P + P+ G PPP P
Sbjct: 270 PPAPGATPAPTTTPAPGGTATPPSGRPGPASTPAPGAATPAPTATPAPGGALTPPPGRP 328
>dbj|BAC57890.1| pherophorin [Volvox carteri f. nagariensis]
Length = 606
Score = 57.0 bits (136), Expect = 5e-08
Identities = 29/66 (43%), Positives = 31/66 (46%)
Frame = +3
Query: 204 PLAVPALPHAPPPLAAPSYAPPPLLRISPPAPRWRTPSHAPPSCPSLLPSPVRQERGPSP 383
P + P P PPP + P PPP PP P P PP P PSP PSP
Sbjct: 214 PPSPPPPPPPPPPPSPPPPPPPPPPPSPPPPPPPPPPPSPPPPPPPPSPSPPPPPPSPSP 273
Query: 384 PPPPPP 401
PPPPPP
Sbjct: 274 PPPPPP 279
Score = 53.9 bits (128), Expect = 5e-07
Identities = 30/70 (42%), Positives = 30/70 (42%)
Frame = +3
Query: 204 PLAVPALPHAPPPLAAPSYAPPPLLRISPPAPRWRTPSHAPPSCPSLLPSPVRQERGPSP 383
P P P PPP P PPP PP P PS PP P PSP PSP
Sbjct: 203 PQPPPPPPPPPPPSPPPPPPPPPPPSPPPPPPPPPPPSPPPPPPPPPPPSPPPPPPPPSP 262
Query: 384 PPPPPPQCTS 413
PPPPP S
Sbjct: 263 SPPPPPPSPS 272
Score = 51.6 bits (122), Expect = 2e-06
Identities = 28/66 (42%), Positives = 29/66 (43%)
Frame = +3
Query: 204 PLAVPALPHAPPPLAAPSYAPPPLLRISPPAPRWRTPSHAPPSCPSLLPSPVRQERGPSP 383
P P+ P PPP PS PPP PP P P PP PS P P P P
Sbjct: 223 PPPPPSPPPPPPPPPPPSPPPPP-----PPPPPPSPPPPPPPPSPSPPPPPPSPSPPPPP 277
Query: 384 PPPPPP 401
PPP PP
Sbjct: 278 PPPSPP 283
Score = 50.8 bits (120), Expect = 4e-06
Identities = 30/66 (45%), Positives = 33/66 (49%)
Frame = +3
Query: 204 PLAVPALPHAPPPLAAPSYAPPPLLRISPPAPRWRTPSHAPPSCPSLLPSPVRQERGPSP 383
P + P P PPP + P PPP PP P +PS PP PS PSP PSP
Sbjct: 226 PPSPPPPPPPPPPPSPPPPPPPPPPPSPPPPPPPPSPSPPPPP-PS--PSPPPPPPPPSP 282
Query: 384 PPPPPP 401
PP PPP
Sbjct: 283 PPAPPP 288
Score = 47.4 bits (111), Expect = 4e-05
Identities = 26/66 (39%), Positives = 27/66 (40%)
Frame = +3
Query: 204 PLAVPALPHAPPPLAAPSYAPPPLLRISPPAPRWRTPSHAPPSCPSLLPSPVRQERGPSP 383
P P P PPP P PPP PP+P P PPS P P P P P
Sbjct: 210 PPPPPPSPPPPPPPPPPPSPPPPPPPPPPPSPPPPPPPPPPPSPPPPPPPPSPSPPPPPP 269
Query: 384 PPPPPP 401
P PPP
Sbjct: 270 SPSPPP 275
Score = 47.0 bits (110), Expect = 6e-05
Identities = 27/68 (39%), Positives = 29/68 (41%), Gaps = 3/68 (4%)
Frame = +3
Query: 207 LAVPALPHAPPPLAAPSYAPPPLLRISPPAPRWRTPSHAPPSCPSLLPSPVRQERGPSPP 386
+ V P PPP P PPP PP+P P PPS P P P P PP
Sbjct: 199 IVVEPQPPPPPPPPPPPSPPPPPPPPPPPSPPPPPPPPPPPSPPPPPPPPPPPSPPPPPP 258
Query: 387 PP---PPP 401
PP PPP
Sbjct: 259 PPSPSPPP 266
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 421,603,661
Number of Sequences: 1393205
Number of extensions: 12445490
Number of successful extensions: 302680
Number of sequences better than 10.0: 10476
Number of HSP's better than 10.0 without gapping: 81480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188930
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 6956733048
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
