Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018203A_C01 KMC018203A_c01
(484 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C86168 hypothetical protein [imported] - Arabidopsis thalia... 119 1e-26
ref|NP_171874.1| hypothetical protein; protein id: At1g03780.1 [... 119 1e-26
ref|NP_199240.1| putative protein; protein id: At5g44270.1 [Arab... 102 2e-21
dbj|BAC16711.1| contains ESTs AU086037(S2439),D40450(S2439)~simi... 85 4e-16
ref|NP_186749.1| hypothetical protein; protein id: At3g01015.1 [... 62 3e-09
>pir||C86168 hypothetical protein [imported] - Arabidopsis thaliana
gi|4204309|gb|AAD10690.1| Hypothetical protein
[Arabidopsis thaliana]
Length = 743
Score = 119 bits (299), Expect = 1e-26
Identities = 57/88 (64%), Positives = 69/88 (77%)
Frame = -1
Query: 481 KIKEKETMYKRYREESEAERMIEEEKALKQLRRTMVPHARPVPKFDHPFCPQKAAKEATK 302
+IKEKE YKRYREESEA +M+EEE+ALKQ+R+TMVPHARPVP F+ PF PQK+ K TK
Sbjct: 649 QIKEKENQYKRYREESEAAKMVEEERALKQMRKTMVPHARPVPNFNKPFLPQKSNKGTTK 708
Query: 301 PKSPNLRVLKRRERRKVFNGTVVSSPAS 218
KSPNLRV+KR ERR + +S+ S
Sbjct: 709 AKSPNLRVIKRTERRTMMARPTISAATS 736
>ref|NP_171874.1| hypothetical protein; protein id: At1g03780.1 [Arabidopsis
thaliana]
Length = 753
Score = 119 bits (299), Expect = 1e-26
Identities = 57/88 (64%), Positives = 69/88 (77%)
Frame = -1
Query: 481 KIKEKETMYKRYREESEAERMIEEEKALKQLRRTMVPHARPVPKFDHPFCPQKAAKEATK 302
+IKEKE YKRYREESEA +M+EEE+ALKQ+R+TMVPHARPVP F+ PF PQK+ K TK
Sbjct: 659 QIKEKENQYKRYREESEAAKMVEEERALKQMRKTMVPHARPVPNFNKPFLPQKSNKGTTK 718
Query: 301 PKSPNLRVLKRRERRKVFNGTVVSSPAS 218
KSPNLRV+KR ERR + +S+ S
Sbjct: 719 AKSPNLRVIKRTERRTMMARPTISAATS 746
>ref|NP_199240.1| putative protein; protein id: At5g44270.1 [Arabidopsis thaliana]
gi|10176882|dbj|BAB10112.1| contains similarity to
unknown protein~gb|AAD10690.1~gene_id:K9L2.2
[Arabidopsis thaliana]
Length = 309
Score = 102 bits (254), Expect = 2e-21
Identities = 48/75 (64%), Positives = 60/75 (80%)
Frame = -1
Query: 481 KIKEKETMYKRYREESEAERMIEEEKALKQLRRTMVPHARPVPKFDHPFCPQKAAKEATK 302
KIKEKE MYKR+ EE+EA +M+EEE+ALKQLRRT+VP RPV ++PF P K+ KE TK
Sbjct: 225 KIKEKEMMYKRHLEEAEAAKMVEEERALKQLRRTIVPQTRPVSNLNNPFLPHKSNKETTK 284
Query: 301 PKSPNLRVLKRRERR 257
P SP LRV++R +RR
Sbjct: 285 PNSPKLRVIRRIDRR 299
>dbj|BAC16711.1| contains ESTs AU086037(S2439),D40450(S2439)~similar to Arabidopsis
thaliana chromosome1, F11M21.29~unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 815
Score = 85.1 bits (209), Expect = 4e-16
Identities = 44/72 (61%), Positives = 54/72 (74%), Gaps = 4/72 (5%)
Frame = -1
Query: 478 IKEKETMYKRYREESEAERMIEEEKALKQLRRTMVPHARPVPKFDHPFCPQKAAKEATK- 302
+KEKE YKR REE+E + IEEEKALKQLRRT+VP ARP+PKFD PF PQ++ KE +
Sbjct: 713 VKEKEITYKRLREENEFAQKIEEEKALKQLRRTLVPQARPLPKFDRPFRPQRSTKEGQEG 772
Query: 301 -PKS--PNLRVL 275
P S P LR++
Sbjct: 773 TPSSDDPTLRLI 784
>ref|NP_186749.1| hypothetical protein; protein id: At3g01015.1 [Arabidopsis
thaliana] gi|12322647|gb|AAG51320.1|AC067753_1
hypothetical protein; 557-2776 [Arabidopsis thaliana]
Length = 488
Score = 62.0 bits (149), Expect = 3e-09
Identities = 24/75 (32%), Positives = 49/75 (65%)
Frame = -1
Query: 481 KIKEKETMYKRYREESEAERMIEEEKALKQLRRTMVPHARPVPKFDHPFCPQKAAKEATK 302
++ EK + ++Y+ E E ++ + EE+ +++LR+ +VP A+P+P FD PF P+++ K T
Sbjct: 391 QVTEKINLVEQYKTERERQQKLAEEEEIRRLRKELVPKAQPMPYFDRPFIPKRSNKHPTV 450
Query: 301 PKSPNLRVLKRRERR 257
P+ P + + ++ R
Sbjct: 451 PRDPKFNIPQHKKIR 465
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 360,876,891
Number of Sequences: 1393205
Number of extensions: 6979703
Number of successful extensions: 23528
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 22547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23466
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
