Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018191A_C01 KMC018191A_c01
(545 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB02717.1| aldose 1-epimerase-like protein [Arabidopsis tha... 92 1e-32
ref|NP_566594.1| aldose 1-epimerase, putative; protein id: At3g1... 92 1e-32
gb|AAL75737.1|AC091724_10 Putative aldose 1-epimerase - like pro... 97 1e-19
pir||T01933 probable aldose 1-epimerase (EC 5.1.3.3) - common to... 65 4e-17
ref|ZP_00066991.1| hypothetical protein [Microbulbifer degradans... 62 3e-15
>dbj|BAB02717.1| aldose 1-epimerase-like protein [Arabidopsis thaliana]
Length = 341
Score = 92.4 bits (228), Expect(2) = 1e-32
Identities = 45/77 (58%), Positives = 54/77 (69%)
Frame = -3
Query: 393 SSSRVLNLWTNVPGMQFYTANYVDGVAGKEGAVYAKACWAYVWRPRDSPMP*TTPNFPSI 214
+SSRVLNLWTNVPGMQFYT NYV+GV GK AVY K + + P NFPS+
Sbjct: 265 ASSRVLNLWTNVPGMQFYTGNYVNGVVGKGNAVYGKHAGVCL-ETQGFPNAINQSNFPSV 323
Query: 213 VIRPGEKYQHTLLYEFS 163
V++ GEKY HT+L+EFS
Sbjct: 324 VVKAGEKYNHTMLFEFS 340
Score = 68.9 bits (167), Expect(2) = 1e-32
Identities = 30/47 (63%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Frame = -1
Query: 545 PVKGTPFDFTSQKRIGDTISQLGMGYDHNYVLDC-GEEKEAFEPCCK 408
PVKGTPFDFT +KRIG++I ++G+GYDHNYVLDC +EKE + K
Sbjct: 214 PVKGTPFDFTEEKRIGESIGEVGIGYDHNYVLDCPDQEKEGLKHAAK 260
>ref|NP_566594.1| aldose 1-epimerase, putative; protein id: At3g17940.1, supported by
cDNA: gi_14532615 [Arabidopsis thaliana]
gi|14532616|gb|AAK64036.1| putative aldose 1-epimerase
[Arabidopsis thaliana] gi|25054834|gb|AAN71907.1|
putative aldose 1-epimerase [Arabidopsis thaliana]
Length = 323
Score = 92.4 bits (228), Expect(2) = 1e-32
Identities = 45/77 (58%), Positives = 54/77 (69%)
Frame = -3
Query: 393 SSSRVLNLWTNVPGMQFYTANYVDGVAGKEGAVYAKACWAYVWRPRDSPMP*TTPNFPSI 214
+SSRVLNLWTNVPGMQFYT NYV+GV GK AVY K + + P NFPS+
Sbjct: 247 ASSRVLNLWTNVPGMQFYTGNYVNGVVGKGNAVYGKHAGVCL-ETQGFPNAINQSNFPSV 305
Query: 213 VIRPGEKYQHTLLYEFS 163
V++ GEKY HT+L+EFS
Sbjct: 306 VVKAGEKYNHTMLFEFS 322
Score = 68.9 bits (167), Expect(2) = 1e-32
Identities = 30/47 (63%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Frame = -1
Query: 545 PVKGTPFDFTSQKRIGDTISQLGMGYDHNYVLDC-GEEKEAFEPCCK 408
PVKGTPFDFT +KRIG++I ++G+GYDHNYVLDC +EKE + K
Sbjct: 196 PVKGTPFDFTEEKRIGESIGEVGIGYDHNYVLDCPDQEKEGLKHAAK 242
>gb|AAL75737.1|AC091724_10 Putative aldose 1-epimerase - like protein [Oryza sativa]
gi|21306610|gb|AAM46059.1|AC122145_13 Putative aldose
1-epimerase - like protein [Oryza sativa (japonica
cultivar-group)]
Length = 343
Score = 97.4 bits (241), Expect = 1e-19
Identities = 49/93 (52%), Positives = 62/93 (65%)
Frame = -3
Query: 441 GRERSFRAMLQK*GTPSSSRVLNLWTNVPGMQFYTANYVDGVAGKEGAVYAKACWAYVWR 262
G E++ K S+SR L+LWT+ PGMQFYTANYVDGV GK GAVY K +
Sbjct: 251 GEEKNGLKHAAKLKDSSNSRTLDLWTDAPGMQFYTANYVDGVTGKGGAVYGKHSGVCL-E 309
Query: 261 PRDSPMP*TTPNFPSIVIRPGEKYQHTLLYEFS 163
+ P PNFPS+V++PGEKY+HT+L+EFS
Sbjct: 310 TQGFPNAINQPNFPSVVVQPGEKYKHTMLFEFS 342
Score = 62.0 bits (149), Expect = 4e-09
Identities = 28/54 (51%), Positives = 36/54 (65%)
Frame = -1
Query: 545 PVKGTPFDFTSQKRIGDTISQLGMGYDHNYVLDCGEEKEAFEPCCKSEGRHRAR 384
PVKGTPFDFT++ +IG I+ + GYDHNYVLD GEEK + K + +R
Sbjct: 217 PVKGTPFDFTTEHKIGARINDVPGGYDHNYVLDSGEEKNGLKHAAKLKDSSNSR 270
>pir||T01933 probable aldose 1-epimerase (EC 5.1.3.3) - common tobacco
gi|2739168|gb|AAB94619.1| aldose-1-epimerase-like
protein [Nicotiana tabacum]
Length = 356
Score = 64.7 bits (156), Expect(2) = 4e-17
Identities = 34/76 (44%), Positives = 45/76 (58%)
Frame = -3
Query: 390 SSRVLNLWTNVPGMQFYTANYVDGVAGKEGAVYAKACWAYVWRPRDSPMP*TTPNFPSIV 211
S RV+++ + PG+QFYTAN+V+ GK G VY A P PNFPS +
Sbjct: 279 SGRVMDVQASSPGVQFYTANFVNNTKGKGGFVYQPHS-ALSLETLVFPDAVNHPNFPSTI 337
Query: 210 IRPGEKYQHTLLYEFS 163
+ PGEKY H++LY FS
Sbjct: 338 VNPGEKYVHSVLYTFS 353
Score = 44.7 bits (104), Expect(2) = 4e-17
Identities = 18/37 (48%), Positives = 26/37 (69%)
Frame = -1
Query: 545 PVKGTPFDFTSQKRIGDTISQLGMGYDHNYVLDCGEE 435
P+K TP+DF +++G I++L GYD NYVLD E+
Sbjct: 231 PIKNTPYDFLKPRKVGSRINKLKNGYDINYVLDSTEK 267
>ref|ZP_00066991.1| hypothetical protein [Microbulbifer degradans 2-40]
Length = 357
Score = 62.4 bits (150), Expect(2) = 3e-15
Identities = 30/78 (38%), Positives = 46/78 (58%)
Frame = -3
Query: 396 PSSSRVLNLWTNVPGMQFYTANYVDGVAGKEGAVYAKACWAYVWRPRDSPMP*TTPNFPS 217
P++ RVL + T PG+QFY+ N++DG +G V+ + P+ P PNFPS
Sbjct: 279 PATGRVLEVKTTEPGLQFYSGNFLDGTLQGKGRVFNHRS-GFCLEPQHFPDAPNQPNFPS 337
Query: 216 IVIRPGEKYQHTLLYEFS 163
++ PGE+Y T+ +EFS
Sbjct: 338 TLLLPGEEYTSTMSFEFS 355
Score = 40.4 bits (93), Expect(2) = 3e-15
Identities = 25/53 (47%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Frame = -1
Query: 542 VKGTPFDFTSQKRIGDTISQ------LGMGYDHNYVLDCGEEKEAFEPCCKSE 402
V TPFDF S+K IG I+ LG GYDHN+VL+ K AFE + E
Sbjct: 226 VANTPFDFRSRKAIGKDINANNNQLLLGRGYDHNFVLNKTAAK-AFELAARVE 277
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 530,070,147
Number of Sequences: 1393205
Number of extensions: 12377300
Number of successful extensions: 32837
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 31688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32739
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
