Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018189A_C01 KMC018189A_c01
(776 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568437.1| Expressed protein; protein id: At5g23860.1, sup... 475 e-133
gb|AAK96884.1| beta tubulin [Arabidopsis thaliana] gi|20148289|g... 474 e-133
sp|P37392|TBB1_LUPAL TUBULIN BETA-1 CHAIN gi|486734|pir||S35142 ... 471 e-132
gb|AAL92026.1|AF484959_1 tubulin beta-1 [Gossypium hirsutum] gi|... 471 e-132
sp|P45960|TBB2_ORYSA TUBULIN BETA CHAIN gi|493708|dbj|BAA06381.1... 470 e-131
>ref|NP_568437.1| Expressed protein; protein id: At5g23860.1, supported by cDNA:
gi_15451225, supported by cDNA: gi_20148288 [Arabidopsis
thaliana] gi|27735261|sp|P29516|TBB8_ARATH Tubulin
beta-8 chain gi|10176853|dbj|BAB10059.1| beta tubulin
[Arabidopsis thaliana]
Length = 449
Score = 475 bits (1222), Expect = e-133
Identities = 228/231 (98%), Positives = 229/231 (98%)
Frame = +2
Query: 83 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGNTDMQLERVNVYYNEASCGRFV 262
MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQG D+QLERVNVYYNEASCGRFV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60
Query: 263 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 442
PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 443 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 622
RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
Query: 623 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISA 775
EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISA
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISA 231
>gb|AAK96884.1| beta tubulin [Arabidopsis thaliana] gi|20148289|gb|AAM10035.1| beta
tubulin [Arabidopsis thaliana]
Length = 449
Score = 474 bits (1221), Expect = e-133
Identities = 228/231 (98%), Positives = 229/231 (98%)
Frame = +2
Query: 83 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGNTDMQLERVNVYYNEASCGRFV 262
MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQG D+QLERVNVYYNEASCGRFV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGEKDLQLERVNVYYNEASCGRFV 60
Query: 263 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 442
PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 443 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 622
RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
Query: 623 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISA 775
EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISA
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISA 231
>sp|P37392|TBB1_LUPAL TUBULIN BETA-1 CHAIN gi|486734|pir||S35142 tubulin beta chain -
white lupine gi|402636|emb|CAA49736.1| Beta tubulin 1
[Lupinus albus]
Length = 447
Score = 471 bits (1212), Expect = e-132
Identities = 226/231 (97%), Positives = 229/231 (98%)
Frame = +2
Query: 83 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGNTDMQLERVNVYYNEASCGRFV 262
MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRY G+ ++QLERVNVYYNEASCGRFV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYGGDNELQLERVNVYYNEASCGRFV 60
Query: 263 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 442
PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 443 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 622
RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
Query: 623 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISA 775
EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISA
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISA 231
>gb|AAL92026.1|AF484959_1 tubulin beta-1 [Gossypium hirsutum]
gi|19569609|gb|AAL92118.1|AF487511_1 beta-tubulin
[Gossypium hirsutum]
Length = 445
Score = 471 bits (1212), Expect = e-132
Identities = 225/231 (97%), Positives = 230/231 (99%)
Frame = +2
Query: 83 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGNTDMQLERVNVYYNEASCGRFV 262
MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRY G++++QLER+NVYYNEASCGRFV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYGGDSELQLERINVYYNEASCGRFV 60
Query: 263 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 442
PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 443 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 622
RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
Query: 623 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISA 775
EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISA
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISA 231
>sp|P45960|TBB2_ORYSA TUBULIN BETA CHAIN gi|493708|dbj|BAA06381.1| beta-tubulin [Oryza
sativa (japonica cultivar-group)]
gi|20804582|dbj|BAB92274.1| tubulin beta chain [Oryza
sativa (japonica cultivar-group)]
Length = 447
Score = 470 bits (1209), Expect = e-131
Identities = 225/231 (97%), Positives = 228/231 (98%)
Frame = +2
Query: 83 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGNTDMQLERVNVYYNEASCGRFV 262
MREILHIQGGQCGNQIGAKFWEVVC EHGID TGRY GN+D+QLERVNVYYNEASCGRFV
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGRYTGNSDLQLERVNVYYNEASCGRFV 60
Query: 263 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 442
PRAVLMDLEPGTMDSVR+GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 443 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 622
RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
Sbjct: 121 RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV 180
Query: 623 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISA 775
EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISA
Sbjct: 181 EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISA 231
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 714,421,043
Number of Sequences: 1393205
Number of extensions: 17173865
Number of successful extensions: 73233
Number of sequences better than 10.0: 1787
Number of HSP's better than 10.0 without gapping: 66607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72281
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38375267554
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
