Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018183A_C01 KMC018183A_c01
(579 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_072974.1| lipoprotein, putative [Mycoplasma genitalium] g... 32 7.5
emb|CAD70399.1| hypothetical protein [Neurospora crassa] gi|2892... 31 9.7
>ref|NP_072974.1| lipoprotein, putative [Mycoplasma genitalium]
gi|1351539|sp|P47549|Y307_MYCGE Hypothetical lipoprotein
MG307 precursor gi|1361657|pir||I64233 hypothetical
protein MG307 - Mycoplasma genitalium
gi|3844886|gb|AAC71529.1| lipoprotein, putative
[Mycoplasma genitalium]
Length = 1177
Score = 31.6 bits (70), Expect = 7.5
Identities = 24/90 (26%), Positives = 38/90 (41%), Gaps = 4/90 (4%)
Frame = -3
Query: 577 DKKWATLC*NQDGTNYGV----KYLIETLHGNIGKMPEHLQEQEQLKLPGKTRNLLTYSG 410
+K+W L +DG N KY+++ GN+ P L + Q K + N++
Sbjct: 275 NKRWEQLIEGKDGLNTAKTGLEKYILDQNQGNLIDFPTTLSDNTQTKQIVDSLNIVDQLE 334
Query: 409 TPNLNGLKDIVLPTGLGMLASDKPQRPLLR 320
NL L L +L DK Q P ++
Sbjct: 335 AANLGA----SLNLKLDLLNQDKDQLPTIK 360
>emb|CAD70399.1| hypothetical protein [Neurospora crassa] gi|28925202|gb|EAA34283.1|
predicted protein [Neurospora crassa]
Length = 238
Score = 31.2 bits (69), Expect = 9.7
Identities = 32/107 (29%), Positives = 48/107 (43%), Gaps = 1/107 (0%)
Frame = -3
Query: 526 VKYLIETLHGNIGKMPEHLQEQEQLKLPGKTRNLLTYSG-TPNLNGLKDIVLPTGLGMLA 350
V ++ LHG G+ E + LPG+ +LLT G T N G +VL G+LA
Sbjct: 28 VSSMVAFLHGRGGQPFEVRRLGSVFDLPGEPAHLLTDHGHTTNAAGGTGVVLVGFGGLLA 87
Query: 349 SDKPQRPLLRFELTLFFVPSLFLYVKGCIALLAFSITLV*IFRPRVL 209
R ++ T S F Y+ I +L++ +TL + VL
Sbjct: 88 LWLEHRSRAKYGKT-----SPFYYLWALITILSWLLTLTALIYTYVL 129
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,560,611
Number of Sequences: 1393205
Number of extensions: 10568370
Number of successful extensions: 27908
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27894
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
