Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018181A_C01 KMC018181A_c01
(503 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_028489.1| unknown protein; protein id: At2g18680.1 [Arabi... 33 1.8
pir||C84567 hypothetical protein At2g18680 [imported] - Arabidop... 33 1.8
ref|NP_478006.1| wsv484 [shrimp white spot syndrome virus] gi|17... 33 2.4
ref|NP_702802.1| hypothetical protein [Plasmodium falciparum 3D7... 32 3.1
ref|NP_181048.1| hypothetical protein; protein id: At2g35030.1 [... 32 3.1
>ref|NP_028489.1| unknown protein; protein id: At2g18680.1 [Arabidopsis thaliana]
gi|20197433|gb|AAD08937.2| unknown protein [Arabidopsis
thaliana]
Length = 249
Score = 33.1 bits (74), Expect = 1.8
Identities = 29/101 (28%), Positives = 51/101 (49%)
Frame = +1
Query: 37 FILTDFIIFVRS*SNFAAASAASNNNDTFAFHNFSFLSISPSFTSFPLIIKCQHNIVSLF 216
FI II + S ASA ++ +D+F +F L++ + PL+ + SL
Sbjct: 30 FIAVSSIINLLSTLVMVHASALTHKDDSFEIKDFPILTLK--YWKGPLVTNFYIVLFSLG 87
Query: 217 YSYLFFLHIFSTTYQVSTQHFSSFQSGSPSLFDLKSDLETW 339
Y +LFF+ +FS + ST+ S + S +LF + + E++
Sbjct: 88 YWFLFFIVLFSIVF-FSTK-LDSLAAKSRALFIVFAVFESY 126
>pir||C84567 hypothetical protein At2g18680 [imported] - Arabidopsis thaliana
Length = 287
Score = 33.1 bits (74), Expect = 1.8
Identities = 29/101 (28%), Positives = 51/101 (49%)
Frame = +1
Query: 37 FILTDFIIFVRS*SNFAAASAASNNNDTFAFHNFSFLSISPSFTSFPLIIKCQHNIVSLF 216
FI II + S ASA ++ +D+F +F L++ + PL+ + SL
Sbjct: 68 FIAVSSIINLLSTLVMVHASALTHKDDSFEIKDFPILTLK--YWKGPLVTNFYIVLFSLG 125
Query: 217 YSYLFFLHIFSTTYQVSTQHFSSFQSGSPSLFDLKSDLETW 339
Y +LFF+ +FS + ST+ S + S +LF + + E++
Sbjct: 126 YWFLFFIVLFSIVF-FSTK-LDSLAAKSRALFIVFAVFESY 164
>ref|NP_478006.1| wsv484 [shrimp white spot syndrome virus]
gi|17016879|gb|AAL33485.1| wsv484 [shrimp white spot
syndrome virus] gi|19481603|gb|AAL88879.1| WSSV011
[shrimp white spot syndrome virus]
Length = 216
Score = 32.7 bits (73), Expect = 2.4
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +2
Query: 95 PLHLTTMIHLHFIISLFFLSLLPSHLF 175
PL L T HL I +FF SLL +HLF
Sbjct: 49 PLFLGTFYHLQIIYHIFFASLLSAHLF 75
>ref|NP_702802.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498218|emb|CAD49189.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 104
Score = 32.3 bits (72), Expect = 3.1
Identities = 21/34 (61%), Positives = 22/34 (63%), Gaps = 1/34 (2%)
Frame = +3
Query: 135 FLFSFYLSFLHIFSTNYQVSTQHSFSL-LFLSLF 233
FL SF LSFL I NY +S SFSL L LSLF
Sbjct: 68 FLLSFLLSFLLICFLNYLLSFSFSFSLFLSLSLF 101
>ref|NP_181048.1| hypothetical protein; protein id: At2g35030.1 [Arabidopsis
thaliana] gi|7485810|pir||T00484 hypothetical protein
At2g35030 [imported] - Arabidopsis thaliana
gi|3033399|gb|AAC12843.1| hypothetical protein
[Arabidopsis thaliana]
Length = 627
Score = 32.3 bits (72), Expect = 3.1
Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Frame = -2
Query: 409 FKTLSIMMLNV--ACAHSGIIQMGITMFRDLT*DQI--VKEIHF 290
FK ++ LN+ AC+H+G+++ G+ F+DL D+ ++E H+
Sbjct: 430 FKPSAVTYLNLLFACSHAGLVEKGMEFFKDLVRDESLPLREEHY 473
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 405,498,134
Number of Sequences: 1393205
Number of extensions: 8394502
Number of successful extensions: 25102
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 24147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25067
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
