Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018176A_C02 KMC018176A_c02
(694 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD21166.1| SDL-1 protein [Nicotiana plumbaginifolia] 153 2e-36
ref|NP_187467.1| hypothetical protein; protein id: At3g08550.1 [... 139 3e-32
ref|NP_181676.1| hypothetical protein; protein id: At2g41450.1 [... 61 1e-08
dbj|BAA96586.1| unnamed protein product [Oryza sativa (japonica ... 44 7e-06
ref|NP_191279.1| hypothetical protein; protein id: At3g57200.1 [... 44 0.002
>emb|CAD21166.1| SDL-1 protein [Nicotiana plumbaginifolia]
Length = 529
Score = 153 bits (386), Expect = 2e-36
Identities = 82/122 (67%), Positives = 97/122 (79%), Gaps = 3/122 (2%)
Frame = -2
Query: 693 EEMMKWYNEHVVWGDKDLKLKLLRKGILTRIYAPMVIVQSLRESGVFSSVIASA-PTLSK 517
+EM+ WY EHVVW DK + LKLLRKGILTRIYAPMVIVQ LRESGVFSS+++SA +LSK
Sbjct: 401 DEMLNWYREHVVWTDKAVNLKLLRKGILTRIYAPMVIVQGLRESGVFSSIVSSAHKSLSK 460
Query: 516 ESFLQSIDSSNSSRAVASVSLPSRKAGRTXESQATVRKVLDIESS--SFHEVAVPPLSPP 343
+ FL SI+SSNSS+A AS +LPSRK GR SQAT R+VL+ +S FHE AVPP PP
Sbjct: 461 DKFLASIESSNSSKAAASETLPSRKIGRNQHSQAT-RRVLEESASHFEFHEEAVPPRPPP 519
Query: 342 GV 337
G+
Sbjct: 520 GI 521
>ref|NP_187467.1| hypothetical protein; protein id: At3g08550.1 [Arabidopsis
thaliana] gi|12322724|gb|AAG51348.1|AC012562_9
hypothetical protein; 7436-10438 [Arabidopsis thaliana]
gi|23452834|gb|AAN33186.1| elongation defective 1
[Arabidopsis thaliana]
Length = 533
Score = 139 bits (351), Expect = 3e-32
Identities = 74/128 (57%), Positives = 95/128 (73%), Gaps = 1/128 (0%)
Frame = -2
Query: 693 EEMMKWYNEHVVWGDKDLKLKLLRKGILTRIYAPMVIVQSLRESGVFSSVIASAPT-LSK 517
EEM+ WY EHVVWGDKD+K KLLRKGILTRIY+PMV++Q+L+ESGVFSSV++SA T LSK
Sbjct: 414 EEMLSWYREHVVWGDKDVKTKLLRKGILTRIYSPMVVIQALKESGVFSSVVSSASTNLSK 473
Query: 516 ESFLQSIDSSNSSRAVASVSLPSRKAGRTXESQATVRKVLDIESSSFHEVAVPPLSPPGV 337
+ FL SI SNSSR+ AS SLPS++ + + R +L+ ES A+PPLSPPG+
Sbjct: 474 KKFLSSIHKSNSSRSTASESLPSKE---SKSEGISARHLLEAES------AIPPLSPPGM 524
Query: 336 DDIDLSSE 313
+ +E
Sbjct: 525 EQARFFTE 532
>ref|NP_181676.1| hypothetical protein; protein id: At2g41450.1 [Arabidopsis thaliana]
gi|7452468|pir||T02440 hypothetical protein At2g41450
[imported] - Arabidopsis thaliana
gi|3241943|gb|AAC23730.1| hypothetical protein
[Arabidopsis thaliana]
Length = 991
Score = 61.2 bits (147), Expect = 1e-08
Identities = 28/36 (77%), Positives = 31/36 (85%)
Frame = -2
Query: 693 EEMMKWYNEHVVWGDKDLKLKLLRKGILTRIYAPMV 586
EEM++WY E VVW D +L LKLLRKGILTRIYAPMV
Sbjct: 955 EEMLQWYRERVVWTDDNLILKLLRKGILTRIYAPMV 990
>dbj|BAA96586.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 556
Score = 43.9 bits (102), Expect(2) = 7e-06
Identities = 30/82 (36%), Positives = 45/82 (54%)
Frame = -2
Query: 585 IVQSLRESGVFSSVIASAPTLSKESFLQSIDSSNSSRAVASVSLPSRKAGRTXESQATVR 406
I++ L+ESGVF++ + SA +K SSN+ P+ G QATVR
Sbjct: 474 IIRGLKESGVFTTAVTSAKAHAK------FKSSNTDLKNKESIHPNITQG--DHLQATVR 525
Query: 405 KVLDIESSSFHEVAVPPLSPPG 340
K+L++ + E A+PP+SPPG
Sbjct: 526 KILEMVDAQ--EEAMPPMSPPG 545
Score = 27.7 bits (60), Expect(2) = 7e-06
Identities = 15/35 (42%), Positives = 19/35 (53%)
Frame = -1
Query: 685 DEVV**ACCMG**RPEVEIVEEGNFDSHICSHGHS 581
D +V C M R + E EEG D+HIC +G S
Sbjct: 411 DRLVPGTCFMERQRYQFEAFEEGCVDTHICPNGKS 445
>ref|NP_191279.1| hypothetical protein; protein id: At3g57200.1 [Arabidopsis
thaliana] gi|11357707|pir||T45798 hypothetical protein
F28O9.50 - Arabidopsis thaliana
gi|6735299|emb|CAB68126.1| putative protein [Arabidopsis
thaliana]
Length = 439
Score = 44.3 bits (103), Expect = 0.002
Identities = 32/85 (37%), Positives = 46/85 (53%)
Frame = -2
Query: 588 VIVQSLRESGVFSSVIASAPTLSKESFLQSIDSSNSSRAVASVSLPSRKAGRTXESQATV 409
VI+Q LRE+GVFSSV+ +A S NSS A S S +R++ + + +
Sbjct: 360 VIIQELREAGVFSSVVIAA---------HKSPSKNSSTA-DSTSGITRESSQETGKRRVL 409
Query: 408 RKVLDIESSSFHEVAVPPLSPPGVD 334
LD++ S AVPP SPPG++
Sbjct: 410 EFHLDVDGES-QASAVPPQSPPGLE 433
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 596,952,224
Number of Sequences: 1393205
Number of extensions: 13067812
Number of successful extensions: 49120
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 41074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47758
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31401661572
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
