Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018146A_C01 KMC018146A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565857.1| translin-like protein; protein id: At2g37020.1,... 211 4e-54
pir||E84787 translin-like protein [imported] - Arabidopsis thaliana 190 1e-47
gb|EAA11822.1| agCP6534 [Anopheles gambiae str. PEST] 122 4e-27
ref|NP_610591.1| CG11761-PA [Drosophila melanogaster] gi|7303735... 119 3e-26
sp|P79769|TSN_CHICK Translin gi|1770301|emb|CAA64470.1| Translin... 118 6e-26
>ref|NP_565857.1| translin-like protein; protein id: At2g37020.1, supported by cDNA:
gi_14596008, supported by cDNA: gi_17978800 [Arabidopsis
thaliana] gi|14596009|gb|AAK68732.1| translin-like
protein [Arabidopsis thaliana]
gi|17978801|gb|AAL47394.1| translin-like protein
[Arabidopsis thaliana] gi|20197945|gb|AAD31587.2|
translin-like protein [Arabidopsis thaliana]
Length = 238
Score = 211 bits (538), Expect = 4e-54
Identities = 100/130 (76%), Positives = 112/130 (85%)
Frame = -2
Query: 575 VSLLTLMHWLETGSLLEHHDAQEKLGLNGPEFRLDLEDYLVGVCFMSNELPRYVVNQVTA 396
VS L MHWLETG+LL H +A+EKLGLN EF L+ EDYL G+CFMSN+LPRYVVN+VTA
Sbjct: 107 VSQLAFMHWLETGTLLVHTEAEEKLGLNSLEFGLETEDYLTGICFMSNDLPRYVVNRVTA 166
Query: 395 GDYDCPRKVLKFLTDLHAAFRMLNLRNDFLRKKFDGMKYDLRKVEEVYYDVKIRGLSSNG 216
GDYDCPRKV+ FLTDLHAAFRMLNLRNDFLRKKFD MKYDLR+VEEVYYDVKIRGL S G
Sbjct: 167 GDYDCPRKVMNFLTDLHAAFRMLNLRNDFLRKKFDSMKYDLRRVEEVYYDVKIRGLISGG 226
Query: 215 ESVGDQGIEG 186
+ G Q ++G
Sbjct: 227 DPPGVQAVQG 236
>pir||E84787 translin-like protein [imported] - Arabidopsis thaliana
Length = 283
Score = 190 bits (482), Expect = 1e-47
Identities = 100/175 (57%), Positives = 112/175 (63%), Gaps = 45/175 (25%)
Frame = -2
Query: 575 VSLLTLMHWLETGSLLEHHDAQEKLGLNGPEFRLDLEDYLVG------------------ 450
VS L MHWLETG+LL H +A+EKLGLN EF L+ EDYL G
Sbjct: 107 VSQLAFMHWLETGTLLVHTEAEEKLGLNSLEFGLETEDYLTGKFLRKNPYLLWKANIYRS 166
Query: 449 ---------------------------VCFMSNELPRYVVNQVTAGDYDCPRKVLKFLTD 351
+CFMSN+LPRYVVN+VTAGDYDCPRKV+ FLTD
Sbjct: 167 NMPYEHFMNRNIAFIFSDLQLFEYFAGICFMSNDLPRYVVNRVTAGDYDCPRKVMNFLTD 226
Query: 350 LHAAFRMLNLRNDFLRKKFDGMKYDLRKVEEVYYDVKIRGLSSNGESVGDQGIEG 186
LHAAFRMLNLRNDFLRKKFD MKYDLR+VEEVYYDVKIRGL S G+ G Q ++G
Sbjct: 227 LHAAFRMLNLRNDFLRKKFDSMKYDLRRVEEVYYDVKIRGLISGGDPPGVQAVQG 281
>gb|EAA11822.1| agCP6534 [Anopheles gambiae str. PEST]
Length = 287
Score = 122 bits (305), Expect = 4e-27
Identities = 62/133 (46%), Positives = 90/133 (67%), Gaps = 3/133 (2%)
Frame = -2
Query: 575 VSLLTLMHWLETGSLLEHHDAQEKLGLNGPE---FRLDLEDYLVGVCFMSNELPRYVVNQ 405
V L+ L +LE G L+ A + LGL+ + F LD+EDYLVG+ +++EL RY VN
Sbjct: 134 VFLIALTIYLEKGFLVTRDTAADILGLSVSQQQGFHLDIEDYLVGILQLASELSRYAVNS 193
Query: 404 VTAGDYDCPRKVLKFLTDLHAAFRMLNLRNDFLRKKFDGMKYDLRKVEEVYYDVKIRGLS 225
V GDY+ P + KF+ DL++ FR+LNL+ND LRK+FD +KYD++K+EE+ YD+ IRGL
Sbjct: 194 VILGDYEKPLTISKFVADLNSGFRLLNLKNDSLRKRFDALKYDVKKIEEIVYDISIRGLR 253
Query: 224 SNGESVGDQGIEG 186
+ E+ G + G
Sbjct: 254 T--EATGAAAVGG 264
>ref|NP_610591.1| CG11761-PA [Drosophila melanogaster] gi|7303735|gb|AAF58784.1|
CG11761-PA [Drosophila melanogaster]
gi|21430104|gb|AAM50730.1| GM27569p [Drosophila
melanogaster]
Length = 235
Score = 119 bits (298), Expect = 3e-26
Identities = 58/121 (47%), Positives = 83/121 (67%), Gaps = 3/121 (2%)
Frame = -2
Query: 575 VSLLTLMHWLETGSLLEHHDAQEKLGLNGPE---FRLDLEDYLVGVCFMSNELPRYVVNQ 405
+ ++ L+ +LE G L+ E LGL + F LD+EDYL+G+ +++EL R+ N
Sbjct: 100 IFIIALVIYLEAGFLVTRETVAEMLGLKISQSEGFHLDVEDYLLGILQLASELSRFATNS 159
Query: 404 VTAGDYDCPRKVLKFLTDLHAAFRMLNLRNDFLRKKFDGMKYDLRKVEEVYYDVKIRGLS 225
VT GDY+ P + F+ DL+ FR+LNL+ND LRK+FD +KYD++K+EEV YDV IRGLS
Sbjct: 160 VTMGDYERPLNISHFIGDLNTGFRLLNLKNDGLRKRFDALKYDVKKIEEVVYDVSIRGLS 219
Query: 224 S 222
S
Sbjct: 220 S 220
>sp|P79769|TSN_CHICK Translin gi|1770301|emb|CAA64470.1| Translin [Gallus gallus]
Length = 229
Score = 118 bits (295), Expect = 6e-26
Identities = 62/132 (46%), Positives = 87/132 (64%), Gaps = 3/132 (2%)
Frame = -2
Query: 575 VSLLTLMHWLETGSLLEHHDAQEKLGLNGPE---FRLDLEDYLVGVCFMSNELPRYVVNQ 405
V L + + +LET +L+ E LG+ F LD+EDYL GV +++EL R VN
Sbjct: 99 VFLASFVVYLETETLVTREAVAEILGIEADRERGFHLDIEDYLSGVLTLASELARLAVNS 158
Query: 404 VTAGDYDCPRKVLKFLTDLHAAFRMLNLRNDFLRKKFDGMKYDLRKVEEVYYDVKIRGLS 225
VTAGDY P ++ F+ +L + FR+LNL+ND LRK++DG+KYD++K+EEV YD+ IRGL
Sbjct: 159 VTAGDYSRPLRISTFINELDSGFRLLNLKNDSLRKRYDGLKYDVKKIEEVVYDLSIRGL- 217
Query: 224 SNGESVGDQGIE 189
N E+ G G E
Sbjct: 218 -NKEATGGAGGE 228
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,082,731
Number of Sequences: 1393205
Number of extensions: 8549571
Number of successful extensions: 17235
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 16866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17227
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
