Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018143A_C01 KMC018143A_c01
(547 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61008.1| unknown [Arabidopsis thaliana] 158 4e-38
ref|NP_568093.1| putative protein; protein id: At5g01620.1, supp... 158 4e-38
pir||T48183 hypothetical protein F7A7.140 - Arabidopsis thaliana... 158 4e-38
gb|AAO60022.1| unknown protein [Oryza sativa (japonica cultivar-... 120 1e-26
pir||T02513 hypothetical protein At2g38320 [imported] - Arabidop... 119 3e-26
>gb|AAM61008.1| unknown [Arabidopsis thaliana]
Length = 449
Score = 158 bits (400), Expect = 4e-38
Identities = 68/100 (68%), Positives = 80/100 (80%)
Frame = -2
Query: 546 GNCYDEKDPINFEGYWGSGSDLPTMRSVEKILSSLKSKVSVLNITQMSEYRKDGHPPIFR 367
GNCY EK PI E YWGSGSD+PTMR V+++L L KVSV+NITQ+SEYRKDGHP ++R
Sbjct: 350 GNCYGEKKPIEEESYWGSGSDIPTMRMVKRVLERLGPKVSVINITQLSEYRKDGHPSVYR 409
Query: 366 QFWEPLRPEPLSNPPSYSDCIPWCLPGVPDVWNELLFPLL 247
+FWEPL + L NP SYSDC WC+PGVPDVWN+LLF L
Sbjct: 410 KFWEPLNEDRLKNPASYSDCTHWCVPGVPDVWNQLLFHFL 449
>ref|NP_568093.1| putative protein; protein id: At5g01620.1, supported by cDNA:
108209., supported by cDNA: gi_19347853 [Arabidopsis
thaliana] gi|19347854|gb|AAL86006.1| unknown protein
[Arabidopsis thaliana] gi|21436143|gb|AAM51318.1|
unknown protein [Arabidopsis thaliana]
Length = 449
Score = 158 bits (400), Expect = 4e-38
Identities = 68/100 (68%), Positives = 80/100 (80%)
Frame = -2
Query: 546 GNCYDEKDPINFEGYWGSGSDLPTMRSVEKILSSLKSKVSVLNITQMSEYRKDGHPPIFR 367
GNCY EK PI E YWGSGSD+PTMR V+++L L KVSV+NITQ+SEYRKDGHP ++R
Sbjct: 350 GNCYGEKKPIEEESYWGSGSDIPTMRMVKRVLERLGPKVSVINITQLSEYRKDGHPSVYR 409
Query: 366 QFWEPLRPEPLSNPPSYSDCIPWCLPGVPDVWNELLFPLL 247
+FWEPL + L NP SYSDC WC+PGVPDVWN+LLF L
Sbjct: 410 KFWEPLNEDRLKNPASYSDCTHWCVPGVPDVWNQLLFHFL 449
>pir||T48183 hypothetical protein F7A7.140 - Arabidopsis thaliana
gi|7327821|emb|CAB82278.1| putative protein [Arabidopsis
thaliana]
Length = 446
Score = 158 bits (400), Expect = 4e-38
Identities = 68/100 (68%), Positives = 80/100 (80%)
Frame = -2
Query: 546 GNCYDEKDPINFEGYWGSGSDLPTMRSVEKILSSLKSKVSVLNITQMSEYRKDGHPPIFR 367
GNCY EK PI E YWGSGSD+PTMR V+++L L KVSV+NITQ+SEYRKDGHP ++R
Sbjct: 347 GNCYGEKKPIEEESYWGSGSDIPTMRMVKRVLERLGPKVSVINITQLSEYRKDGHPSVYR 406
Query: 366 QFWEPLRPEPLSNPPSYSDCIPWCLPGVPDVWNELLFPLL 247
+FWEPL + L NP SYSDC WC+PGVPDVWN+LLF L
Sbjct: 407 KFWEPLNEDRLKNPASYSDCTHWCVPGVPDVWNQLLFHFL 446
>gb|AAO60022.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 441
Score = 120 bits (300), Expect = 1e-26
Identities = 50/100 (50%), Positives = 68/100 (68%)
Frame = -2
Query: 546 GNCYDEKDPINFEGYWGSGSDLPTMRSVEKILSSLKSKVSVLNITQMSEYRKDGHPPIFR 367
GNCY++ PI YWG G+ MR + ++ S+ K V ++NITQ+SEYRKD H I++
Sbjct: 339 GNCYNQTTPIRDLSYWGPGTSKGLMRVIGEVFSTSKVPVGIVNITQLSEYRKDAHTQIYK 398
Query: 366 QFWEPLRPEPLSNPPSYSDCIPWCLPGVPDVWNELLFPLL 247
+ W PL PE ++NP SY+DC WCLPG+ D WNELL+ L
Sbjct: 399 KQWNPLTPEQIANPKSYADCTHWCLPGLQDTWNELLYSKL 438
>pir||T02513 hypothetical protein At2g38320 [imported] - Arabidopsis thaliana
Length = 403
Score = 119 bits (297), Expect = 3e-26
Identities = 54/99 (54%), Positives = 71/99 (71%), Gaps = 3/99 (3%)
Frame = -2
Query: 543 NCYDEKDPINFEGYWGSGSDLPTMRSVEKILSSLKSK---VSVLNITQMSEYRKDGHPPI 373
NCY E I+ EGY G GSD MR +E +L LK++ + ++NITQ+SEYRK+GHP I
Sbjct: 296 NCYGEASLIDKEGYTGRGSDPKMMRVLENVLDGLKNRGLNMQMINITQLSEYRKEGHPSI 355
Query: 372 FRQFWEPLRPEPLSNPPSYSDCIPWCLPGVPDVWNELLF 256
+R+ W ++ +SNP S +DCI WCLPGVPDVWNELL+
Sbjct: 356 YRKQWGTVKENEISNPSSNADCIHWCLPGVPDVWNELLY 394
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 501,591,341
Number of Sequences: 1393205
Number of extensions: 11496114
Number of successful extensions: 33100
Number of sequences better than 10.0: 112
Number of HSP's better than 10.0 without gapping: 31445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32992
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
