Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018136A_C01 KMC018136A_c01
(597 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171616.1| chloroplast RNA-binding protein cp33, putative;... 79 3e-14
gb|AAF26472.1|AC007323_13 T25K16.8 [Arabidopsis thaliana] 60 2e-08
pir||T04346 glycine-rich RNA-binding protein - rice gi|2624326|e... 51 1e-05
pir||S41771 glycine-rich RNA-binding protein RGP-1a - wood tobac... 51 1e-05
gb|AAB66885.1| glycine-rich protein [Oryza sativa] 50 2e-05
>ref|NP_171616.1| chloroplast RNA-binding protein cp33, putative; protein id:
At1g01080.1, supported by cDNA: 21739., supported by
cDNA: gi_16930400 [Arabidopsis thaliana]
gi|16930401|gb|AAL31886.1|AF419554_1 At1g01080/T25K16_7
[Arabidopsis thaliana] gi|21554268|gb|AAM63343.1|
ribonucleoprotein, putative [Arabidopsis thaliana]
gi|22135777|gb|AAM91045.1| At1g01080/T25K16_7
[Arabidopsis thaliana]
Length = 293
Score = 79.3 bits (194), Expect = 3e-14
Identities = 36/58 (62%), Positives = 47/58 (80%)
Frame = -1
Query: 597 FGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGTEFYGRTIVVREGAQRTE 424
FG ++S RVLHDRK G+ RV+AFLSF S ERDAA+S NGT++ GR I+VREG +++E
Sbjct: 235 FGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGTQYEGRRIIVREGIEKSE 292
>gb|AAF26472.1|AC007323_13 T25K16.8 [Arabidopsis thaliana]
Length = 679
Score = 60.5 bits (145), Expect = 2e-08
Identities = 28/41 (68%), Positives = 33/41 (80%)
Frame = -1
Query: 597 FGNVLSVRVLHDRKQGKARVYAFLSFESEAERDAAMSLNGT 475
FG ++S RVLHDRK G+ RV+AFLSF S ERDAA+S NGT
Sbjct: 601 FGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFNGT 641
>pir||T04346 glycine-rich RNA-binding protein - rice gi|2624326|emb|CAA05728.1|
OsGRP1 [Oryza sativa (japonica cultivar-group)]
Length = 160
Score = 51.2 bits (121), Expect = 1e-05
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = -1
Query: 597 FGNVLSVRVLHDRKQGKARVYAFLSFESE-AERDAAMSLNGTEFYGRTIVVREGAQRTEP 421
FG +L ++++DR+ G++R + F++F SE A RDA +NG E GR I V E R
Sbjct: 31 FGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMNGKELDGRNITVNEAQSRRSG 90
Query: 420 *PGFQCLRKDGINFGFSHGG 361
G + G G+ GG
Sbjct: 91 GGGGGGYGQRGGGGGYGGGG 110
>pir||S41771 glycine-rich RNA-binding protein RGP-1a - wood tobacco
gi|469070|dbj|BAA03741.1| RNA-binding glycine-rich
protein-1 (RGP-1a) [Nicotiana sylvestris]
Length = 156
Score = 50.8 bits (120), Expect = 1e-05
Identities = 28/81 (34%), Positives = 44/81 (53%), Gaps = 1/81 (1%)
Frame = -1
Query: 597 FGNVLSVRVLHDRKQGKARVYAFLSFESE-AERDAAMSLNGTEFYGRTIVVREGAQRTEP 421
FG +L ++++DR+ G++R + F++F+ E A RDA +NG + GR I V E R
Sbjct: 29 FGEILDSKIINDRETGRSRGFGFVTFKDEKAMRDAIEGMNGQDLDGRNITVNEAQSRGSG 88
Query: 420 *PGFQCLRKDGINFGFSHGGR 358
G + G G+ GGR
Sbjct: 89 GGGGGGGYRGGSGGGYGGGGR 109
>gb|AAB66885.1| glycine-rich protein [Oryza sativa]
Length = 161
Score = 50.1 bits (118), Expect = 2e-05
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = -1
Query: 597 FGNVLSVRVLHDRKQGKARVYAFLSFESE-AERDAAMSLNGTEFYGRTIVVREGAQRTEP 421
+G +L ++++DR+ G++R + F++F SE A RDA +NG E GR I V E R
Sbjct: 31 YGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMNGKELDGRNITVNEAQSRRSG 90
Query: 420 *PGFQCLRKDGINFGFSHGG 361
G + G G+ GG
Sbjct: 91 GGGGGGYGQRGGGGGYGGGG 110
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,046,306
Number of Sequences: 1393205
Number of extensions: 8812793
Number of successful extensions: 18549
Number of sequences better than 10.0: 394
Number of HSP's better than 10.0 without gapping: 18175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18497
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
