Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018130A_C01 KMC018130A_c01
(570 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568159.1| expressed protein; protein id: At5g05930.1, sup... 80 2e-14
gb|AAM61373.1| unknown [Arabidopsis thaliana] 80 2e-14
dbj|BAB10798.1| gene_id:K18J17.8~unknown protein [Arabidopsis th... 75 6e-13
ref|XP_110727.1| similar to X INACTIVE SPECIFIC TRANSCRIPT PROTE... 36 0.39
dbj|BAB68411.1| CG13760 gene product [Drosophila melanogaster] h... 35 0.51
>ref|NP_568159.1| expressed protein; protein id: At5g05930.1, supported by cDNA:
118390. [Arabidopsis thaliana]
gi|21436487|gb|AAM51559.1| putative guanylate cyclase
[Arabidopsis thaliana]
Length = 274
Score = 79.7 bits (195), Expect = 2e-14
Identities = 40/55 (72%), Positives = 44/55 (79%)
Frame = -1
Query: 570 ICGYDAGADMFEIRDPASSKKQKRISSKSLEEARKAFGTDEDLLLISLEKSNNHH 406
ICGYDA D FEIRDPASSK +RISSK LE ARK+FGTDEDLLLI+LE N +
Sbjct: 218 ICGYDAVRDEFEIRDPASSKIHERISSKCLENARKSFGTDEDLLLINLENMRNQN 272
>gb|AAM61373.1| unknown [Arabidopsis thaliana]
Length = 274
Score = 79.7 bits (195), Expect = 2e-14
Identities = 40/55 (72%), Positives = 44/55 (79%)
Frame = -1
Query: 570 ICGYDAGADMFEIRDPASSKKQKRISSKSLEEARKAFGTDEDLLLISLEKSNNHH 406
ICGYDA D FEIRDPASSK +RISSK LE ARK+FGTDEDLLLI+LE N +
Sbjct: 218 ICGYDAVRDEFEIRDPASSKIHERISSKCLENARKSFGTDEDLLLINLENMRNQN 272
>dbj|BAB10798.1| gene_id:K18J17.8~unknown protein [Arabidopsis thaliana]
Length = 295
Score = 75.1 bits (183), Expect = 6e-13
Identities = 40/60 (66%), Positives = 45/60 (74%), Gaps = 5/60 (8%)
Frame = -1
Query: 570 ICGYDAGADMFEIRDPASSKKQ-----KRISSKSLEEARKAFGTDEDLLLISLEKSNNHH 406
ICGYDA D FEIRDPASSK+ +RISSK LE ARK+FGTDEDLLLI+LE N +
Sbjct: 234 ICGYDAVRDEFEIRDPASSKEMFCRIHERISSKCLENARKSFGTDEDLLLINLENMRNQN 293
>ref|XP_110727.1| similar to X INACTIVE SPECIFIC TRANSCRIPT PROTEIN [Mus musculus]
gi|20984895|ref|XP_136007.1| similar to X INACTIVE
SPECIFIC TRANSCRIPT PROTEIN [Mus musculus]
Length = 172
Score = 35.8 bits (81), Expect = 0.39
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 30/113 (26%)
Frame = -3
Query: 361 IFIPCFA-MILPCYIFLF--CI*YTPLVYFS----------------CYEHSFLRINVPR 239
+F+PCF + LPC++ LF CI L+Y CY + FL + V
Sbjct: 29 LFLPCFVCLFLPCFVCLFLPCIMSNSLLYLFLPCFVSISSLQLCLILCYIYFFLALCV-Y 87
Query: 238 KNLLKWFLLGYMHLFKVKFISQNC-----------ILYYSYQFILFLCKPFIL 113
L +L Y++ F + C IL Y Y F+ F+C F+L
Sbjct: 88 FFLALCLILCYIYFFLALCVCLPCFVSISSLQLCLILCYIYFFLAFVCLSFLL 140
>dbj|BAB68411.1| CG13760 gene product [Drosophila melanogaster] homolog [Homo
sapiens]
Length = 200
Score = 35.4 bits (80), Expect = 0.51
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -1
Query: 564 GYDAGADMFEIRDPASSKKQKRISSKSLEEARKAFGTDEDLLLISLE 424
GY+ +PA + + S + EEAR ++GTDED+L + L+
Sbjct: 153 GYNRATGCIFYNNPAYADRMCSTSISNFEEARTSYGTDEDILFVYLD 199
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,839,611
Number of Sequences: 1393205
Number of extensions: 9124607
Number of successful extensions: 22737
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 22024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22719
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
