Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018114A_C01 KMC018114A_c01
(538 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A84752 hypothetical protein At2g34070 [imported] - Arabidop... 136 2e-31
ref|NP_565779.1| expressed protein; protein id: At2g34070.1, sup... 136 2e-31
ref|NP_564318.1| expressed protein; protein id: At1g29050.1, sup... 134 7e-31
pir||G86412 F28N24.24 protein - Arabidopsis thaliana gi|9502431|... 134 7e-31
dbj|BAB86568.1| OSJNBb0032K15.9 [Oryza sativa (japonica cultivar... 120 1e-26
>pir||A84752 hypothetical protein At2g34070 [imported] - Arabidopsis thaliana
Length = 303
Score = 136 bits (342), Expect = 2e-31
Identities = 63/87 (72%), Positives = 72/87 (82%)
Frame = -3
Query: 536 RSCSGQLEPLAGSTYPAGLPQAANILNSVLKKMNNPVYLLDITLLSQLRKDAHPSTYGED 357
++C+GQ++PL GSTYP G AA+I++ VL M PVYLLDIT LSQLRKDAHPSTYG D
Sbjct: 217 KTCNGQMQPLTGSTYPGGSLPAASIVSRVLSTMRTPVYLLDITTLSQLRKDAHPSTYGGD 276
Query: 356 HSGNDCSHWCLPGLPDTWNQLLYAALT 276
G DCSHWCLPGLPDTWNQLLYAAL+
Sbjct: 277 -GGTDCSHWCLPGLPDTWNQLLYAALS 302
>ref|NP_565779.1| expressed protein; protein id: At2g34070.1, supported by cDNA:
25519. [Arabidopsis thaliana] gi|20196907|gb|AAB67625.2|
expressed protein [Arabidopsis thaliana]
gi|21554400|gb|AAM63505.1| unknown [Arabidopsis
thaliana]
Length = 385
Score = 136 bits (342), Expect = 2e-31
Identities = 63/87 (72%), Positives = 72/87 (82%)
Frame = -3
Query: 536 RSCSGQLEPLAGSTYPAGLPQAANILNSVLKKMNNPVYLLDITLLSQLRKDAHPSTYGED 357
++C+GQ++PL GSTYP G AA+I++ VL M PVYLLDIT LSQLRKDAHPSTYG D
Sbjct: 299 KTCNGQMQPLTGSTYPGGSLPAASIVSRVLSTMRTPVYLLDITTLSQLRKDAHPSTYGGD 358
Query: 356 HSGNDCSHWCLPGLPDTWNQLLYAALT 276
G DCSHWCLPGLPDTWNQLLYAAL+
Sbjct: 359 -GGTDCSHWCLPGLPDTWNQLLYAALS 384
>ref|NP_564318.1| expressed protein; protein id: At1g29050.1, supported by cDNA:
30068., supported by cDNA: gi_18377637, supported by
cDNA: gi_20465654 [Arabidopsis thaliana]
gi|18377638|gb|AAL66969.1| unknown protein [Arabidopsis
thaliana] gi|20465655|gb|AAM20296.1| unknown protein
[Arabidopsis thaliana]
Length = 380
Score = 134 bits (337), Expect = 7e-31
Identities = 60/87 (68%), Positives = 72/87 (81%)
Frame = -3
Query: 536 RSCSGQLEPLAGSTYPAGLPQAANILNSVLKKMNNPVYLLDITLLSQLRKDAHPSTYGED 357
++CSGQ++PL GS+YP+G P ++ +++ VL M PV LLDIT LSQLRKDAHPS+YG D
Sbjct: 294 KTCSGQMQPLGGSSYPSGQPPSSGVVSKVLSSMKKPVTLLDITTLSQLRKDAHPSSYGGD 353
Query: 356 HSGNDCSHWCLPGLPDTWNQLLYAALT 276
G DCSHWCLPGLPDTWNQLLYAALT
Sbjct: 354 -GGTDCSHWCLPGLPDTWNQLLYAALT 379
>pir||G86412 F28N24.24 protein - Arabidopsis thaliana
gi|9502431|gb|AAF88130.1|AC021043_23 Unknown protein
[Arabidopsis thaliana]
Length = 368
Score = 134 bits (337), Expect = 7e-31
Identities = 60/87 (68%), Positives = 72/87 (81%)
Frame = -3
Query: 536 RSCSGQLEPLAGSTYPAGLPQAANILNSVLKKMNNPVYLLDITLLSQLRKDAHPSTYGED 357
++CSGQ++PL GS+YP+G P ++ +++ VL M PV LLDIT LSQLRKDAHPS+YG D
Sbjct: 282 KTCSGQMQPLGGSSYPSGQPPSSGVVSKVLSSMKKPVTLLDITTLSQLRKDAHPSSYGGD 341
Query: 356 HSGNDCSHWCLPGLPDTWNQLLYAALT 276
G DCSHWCLPGLPDTWNQLLYAALT
Sbjct: 342 -GGTDCSHWCLPGLPDTWNQLLYAALT 367
>dbj|BAB86568.1| OSJNBb0032K15.9 [Oryza sativa (japonica cultivar-group)]
Length = 392
Score = 120 bits (301), Expect = 1e-26
Identities = 53/86 (61%), Positives = 65/86 (74%)
Frame = -3
Query: 536 RSCSGQLEPLAGSTYPAGLPQAANILNSVLKKMNNPVYLLDITLLSQLRKDAHPSTYGED 357
RSC+ Q +P+AGS YPAG A + + S + M+ PV+LLDITLLSQLR+D HPS Y
Sbjct: 305 RSCAQQTQPVAGSAYPAGPVPAQSAVRSAIAGMSKPVFLLDITLLSQLRRDGHPSGYSGG 364
Query: 356 HSGNDCSHWCLPGLPDTWNQLLYAAL 279
H GNDCSHWCL G+PD WNQ+LYA+L
Sbjct: 365 HPGNDCSHWCLAGVPDAWNQILYASL 390
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,013,439
Number of Sequences: 1393205
Number of extensions: 9162278
Number of successful extensions: 18818
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 18295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18744
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
